Date:		2005/06/24
Method:		Fisher test
Cut off P-value:		0.05
Target dataset(s):		Chromosome:5 Chromosome:3 Chromosome:4 Chromosome:1 Chromosome:2
Query dataset(s):		SOM Cluster
3_20040001_20070000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL08-12-E04	At3g54110 / uncoupling protein (ucp/PUMP)		At3g54110 ,RAFL08-12-E04 plant uncoupling mitochondrial protein (PUMP) identical to plant uncoupling mitochondrial protein [Arabidopsis thaliana] GI:3115108
5_26340001_26370000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL09-11-J12	At5g66760 / succinate dehydrogenase (ubiquinone), putative		RAFL09-11-J12 ,At5g66760 succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / flavoprotein subunit of complex II identical to SP|O82663 Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (EC 1.3.5.1) (FP) (Flavoprotein subunit of complex II) {Arabidopsis thaliana}
3_2460001_2490000					A	B	C	D	P	P'	N
	Cluster:6-2				2	174	1	4486	0.0041446616	0.008289323	2
		RAFL04-16-E03	At3g07790 / expressed protein		RAFL04-16-E03 ,At3g07790 DGCR14-related similar to DGCR14 protein (DiGeorge syndrome critical region 14) (ES2 protein) (Swiss-Prot:Q96DF8) [Homo sapiens]
		RAFL08-16-C13	At3g07780 / expressed protein		RAFL08-16-C13 ,At3g07780 expressed protein
5_5520001_5550000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	0	4554	0.02337551	0.02337551	1
		RAFL06-12-I17	At5g16840 / RRM-containing protein		At5g16840 ,RAFL06-12-I17 RNA recognition motif (RRM)-containing protein predicted proteins - Arabidopsis thaliana
2_12360001_12390000					A	B	C	D	P	P'	N
	Cluster:7-0				2	245	0	4416	0.002795081	0.002795081	1
		RAFL07-14-N08	At2g28910 / expressed protein		At2g28910 ,RAFL07-14-N08 CAX-interacting protein 4 (CAXIP4) contains Pfam domain PF00098: Zinc knuckle; identical to cDNA CAX-interacting protein 4 GI:27651998
		RAFL08-16-B05	At2g28910 / expressed protein		At2g28910 ,RAFL08-16-B05 CAX-interacting protein 4 (CAXIP4) contains Pfam domain PF00098: Zinc knuckle; identical to cDNA CAX-interacting protein 4 GI:27651998
5_26220001_26250000					A	B	C	D	P	P'	N
	Cluster:9-0				1	31	2	4629	0.020451	0.061353	3
		RAFL05-03-I09	At5g66400 / dehydrin RAB18-related protein (sp P30185)		RAFL05-03-I09 ,At5g66400 dehydrin (RAB18) nearly identical to SP|P30185 Dehydrin Rab18 {Arabidopsis thaliana}
4_13830001_13860000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL05-12-N20	At4g30470 / cinnamoyl-CoA reductase-related		RAFL05-12-N20 ,At4g30470 cinnamoyl-CoA reductase-related similar to cinnamoyl-CoA reductase from Pinus taeda [GI:17978649], Saccharum officinarum [GI:3341511]
4_900001_1200000					A	B	C	D	P	P'	N
	Cluster:9-0				2	30	15	4616	0.005819355	0.075651616	13
		RAFL08-10-G22	At4g02280 / sucrose synthase (UDP-glucose-fructose glucosyltransferase/sucrose-UDP glucosyltransferase), putative		RAFL08-10-G22 ,At4g02280 sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative strong similarity to sucrose synthase GI:6682841 from [Citrus unshiu]
		RAFL05-18-M07	At4g02280 / sucrose synthase (UDP-glucose-fructose glucosyltransferase/sucrose-UDP glucosyltransferase), putative		At4g02280 ,RAFL05-18-M07 sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative strong similarity to sucrose synthase GI:6682841 from [Citrus unshiu]
	Cluster:10-1				2	41	15	4605	0.01034811	0.13452543	13
		RAFL03-07-M07	At4g02380 / late embryogenesis abundant protein family		RAFL03-07-M07 ,At4g02380 late embryogenesis abundant 3 family protein / LEA3 family protein similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein
		RAFL06-13-N20	At4g02380 / late embryogenesis abundant protein family		RAFL06-13-N20 ,At4g02380 late embryogenesis abundant 3 family protein / LEA3 family protein similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein
2_12150001_12180000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL08-11-H19	At2g28550 / AP2 domain transcription factor RAP2.7		RAFL08-11-H19 ,At2g28550 AP2 domain-containing transcription factor RAP2.7 (RAP2.7) nearly identical to AP2 domain transcription factor RAP2.7 (GI:2281639) [Arabidopsis thaliana]
4_7170001_7200000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-13-K22	At4g14300 / heterogeneous nuclear ribonucleoprotein (hnRNP), putative		At4g14300 ,RAFL05-13-K22 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative
5_10950001_10980000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-18-K01	At5g29000 / expressed protein		At5g29000 ,RAFL05-18-K01 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain
2_15360001_15390000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-18-H16	At2g36780 / UDP-glycosyltransferase family		At2g36780 ,RAFL05-18-H16 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
4_17430001_17460000					A	B	C	D	P	P'	N
	Cluster:2-2				2	51	0	4610	1.267773E-4	1.267773E-4	1
		RAFL09-15-K07	At4g39800 / myo-inositol-1-phosphate synthase		At4g39800 ,RAFL09-15-K07 inositol-3-phosphate synthase isozyme 1 / myo-inositol-1-phosphate synthase 1 / MI-1-P synthase 1 / IPS 1 identical to SP|P42801 Inositol-3-phosphate synthase isozyme 1 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 1) (MI-1-P synthase 1) (IPS 1) {Arabidopsis thaliana}
		RAFL09-14-L01	At4g39800 / myo-inositol-1-phosphate synthase		RAFL09-14-L01 ,At4g39800 inositol-3-phosphate synthase isozyme 1 / myo-inositol-1-phosphate synthase 1 / MI-1-P synthase 1 / IPS 1 identical to SP|P42801 Inositol-3-phosphate synthase isozyme 1 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 1) (MI-1-P synthase 1) (IPS 1) {Arabidopsis thaliana}
3_18420001_18450000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL06-09-J08	At3g49720 / expressed protein		RAFL06-09-J08 ,At3g49720 expressed protein
1_2460001_2490000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL03-08-O03	At1g07940 / elongation factor 1-alpha (EF-1-alpha)		RAFL03-08-O03 ,At1g07940 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
3_17820001_17850000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	0	4584	0.016941883	0.016941883	1
		RAFL04-14-I05	At3g48200 / expressed protein		At3g48200 ,RAFL04-14-I05 expressed protein
3_19560001_19590000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL04-17-A20	At3g52800 / zinc finger - like protein		At3g52800 ,RAFL04-17-A20 zinc finger (AN1-like) family protein contains Pfam domain, PF01428: AN1-like Zinc finger
4_1800001_2100000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	0	4554	0.02337551	0.02337551	1
		RAFL07-15-N09	At4g04020 / plastid-lipid associated protein PAP/fibrillin, putative		RAFL07-15-N09 ,At4g04020 plastid-lipid associated protein PAP, putative / fibrillin, putative strong similarity to plastid-lipid associated proteins PAP1 GI:14248554, PAP2 GI:14248556 from [Brassica rapa], fibrillin [Brassica napus] GI:4139097; contains Pfam profile PF04755: PAP_fibrillin
Chromosome:4					A	B	C	D	P	P'	N
	Cluster:8-1				33	129	599	3902	0.0137234	0.45287222	33
		RAFL08-18-B11	At4g36990 / heat shock transcription factor 4 (HSF4)		RAFL08-18-B11 ,At4g36990 heat shock factor protein 4 (HSF4) / heat shock transcription factor 4 (HSTF4) identical to heat shock transcription factor 4 (HSF4) SP:Q96320 from [Arabidopsis thaliana]
		RAFL05-14-K07	At4g27680 / expressed protein		RAFL05-14-K07 ,At4g27680 MSP1 protein, putative / intramitochondrial sorting protein, putative similar to Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4) [Saccharomyces cerevisiae]; contains Pfam domain, PF00004: ATPase, AAA family
		RAFL07-10-J07	At4g31550 / WRKY family transcription factor		RAFL07-10-J07 ,At4g31550 WRKY family transcription factor contains Pfam profile: PF03106 WRKY DNA -binding domain
		RAFL09-17-E21	At4g19410 / pectinacetylesterase, putative		RAFL09-17-E21 ,At4g19410 pectinacetylesterase, putative similar to pectinacetylesterase precursor GI:1431629 from [Vigna radiata]
		RAFL05-14-B17	At4g29160 / expressed protein		At4g29160 ,RAFL05-14-B17 SNF7 family protein contains Pfam domain, PF03357: SNF7 family
		RAFL04-16-G03	At4g02890 / polyubiquitin (UBQ14)		RAFL04-16-G03 ,At4g02890 polyubiquitin (UBQ14) identical to GI:166795; similar to N. sylvestris hexameric polyubiquitin, GenBank accession number M74101
		RAFL09-10-G07	At4g18950 / protein kinase - like protein		At4g18950 ,RAFL09-10-G07 ankyrin protein kinase, putative similar to ankyrin-kinase [Medicago truncatula] gi|18700701|gb|AAL78674
		RAFL05-08-J06	At4g19640 / GTP-binding protein, putative		At4g19640 ,RAFL05-08-J06 Ras-related GTP-binding protein, putative similar to GTP-binding protein RAB5A GI:1370178 from [Lotus japonicus]
		RAFL05-18-E11	At4g03430 / pre-mRNA splicing factor -related		RAFL05-18-E11 ,At4g03430 pre-mRNA splicing factor-related similar to pre-mRNA splicing factor pre-mRNA splicing factor prp1 (SP:Q12381) [Fission yeast]
		RAFL09-11-C11	At4g12040 / expressed protein		RAFL09-11-C11 ,At4g12040 zinc finger (AN1-like) family protein contains Pfam domains, PF01428: AN1-like Zinc finger and PF01754: A20-like zinc finger
		RAFL05-07-H10	At4g30990 / hypothetical protein		At4g30990 ,RAFL05-07-H10 expressed protein ; expression supported by MPSS
		RAFL09-09-O15	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL09-09-O15 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL09-06-I17	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL09-06-I17 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL04-17-I16	At4g02380 / late embryogenesis abundant protein family		RAFL04-17-I16 ,At4g02380 late embryogenesis abundant 3 family protein / LEA3 family protein similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein
		RAFL11-02-D14	At4g36730 / G-box-binding factor 1		At4g36730 ,RAFL11-02-D14 G-box binding factor 1 (GBF1) identical to G-box binding factor 1 SP:P42774 from [Arabidopsis thaliana]; contains Pfam profile: PF00170 bZIP transcription factor
		RAFL09-14-I01	At4g33920 / expressed protein		At4g33920 ,RAFL09-14-I01 protein phosphatase 2C family protein / PP2C family protein similar to Ser/Thr protein phosphatase 2C (PP2C6) (GI:15020818) [Arabidopsis thaliana]; similar to protein phosphatase 2C (GI:3608412) [Mesembryanthemum crystallinum]; contains Pfam PF00481 : Protein phosphatase 2C domain
		RAFL08-09-D17	At4g11220 / expressed protein		At4g11220 ,RAFL08-09-D17 reticulon family protein (RTNLB2) similar to SP|Q64548 Reticulon 1 (Neuroendocrine-specific protein) {Rattus norvegicus}; contains Pfam profile PF02453: Reticulon
		RAFL05-14-O22	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL05-14-O22 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL05-19-O11	At4g29190 / expressed protein		At4g29190 ,RAFL05-19-O11 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
		RAFL04-12-D15	At4g38360 / expressed protein		RAFL04-12-D15 ,At4g38360 expressed protein contains Pfam profile PF03619: Domain of unknown function
		RAFL02-09-C13	At4g28240 / wound induced protein -related		At4g28240 ,RAFL02-09-C13 wound-responsive protein-related wound-induced protein - tomato (fragment), PIR2:S19773
		RAFL04-12-N22	At4g25170 / expressed protein		At4g25170 ,RAFL04-12-N22 expressed protein
		RAFL05-07-L01	At4g24400 / CBL-interacting protein kinase 8		RAFL05-07-L01 ,At4g24400 CBL-interacting protein kinase 8 (CIPK8) identical to CBL-interacting protein kinase 8 [Arabidopsis thaliana] GP|13249115|gb|AAK16683; contains Pfam profiles PF00069: Protein kinase domain and PF03822: NAF domain
		RAFL08-18-J23	At4g25650 / Rieske (2Fe-2S) domain-containing protein		RAFL08-18-J23 ,At4g25650 Rieske [2Fe-2S] domain-containing protein similar to cell death suppressor protein lls1 from Zea mays [gi:1935909], Rieske iron-sulfur protein Tic55 from Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske [2Fe-2S] domain
		RAFL09-12-B15	At4g30600 / signal recognition particle receptor-related protein		At4g30600 ,RAFL09-12-B15 signal recognition particle receptor alpha subunit family protein similar to Signal recognition particle receptor alpha subunit (SR-alpha) (Docking protein alpha) (DP-alpha) (SP:P08240) [Homo sapiens}; similar to Signal recognition particle receptor alpha subunit (SR-alpha) (Docking protein alpha) (DP-alpha) (SP:P06625) [Canis familiaris}; contains Pfam PF04086: Signal recognition particle, alpha subunit, N-terminal; contains Pfam PF00448: SRP54-type protein, GTPase domain
		RAFL08-16-G17	At4g17500 / ethylene responsive element binding factor 1 (frameshift !)		RAFL08-16-G17 ,At4g17500 ethylene-responsive element-binding protein 1 (ERF1) / EREBP-2 protein identical to SP|O80337 Ethylene responsive element binding factor 1 (EREBP-2 protein) [Arabidopsis thaliana]; a false single bp exon was added to circumvent a single basepair insertion in the genomic sequence, supported by cDNA/genome alignment.
		RAFL07-10-D10	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL07-10-D10 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL05-16-P22	At4g05150 / octicosapeptide/Phox/Bem1p (PB1) domain-containing protein		At4g05150 ,RAFL05-16-P22 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein various predicted proteins contains Pfam profile PF00564: PB1 domain
		RAFL05-18-A07	At4g27500 / proton pump interactor		RAFL05-18-A07 ,At4g27500 expressed protein non-consensus GA donor splice site at exon 6
		RAFL09-15-J03	At4g29160 / expressed protein		RAFL09-15-J03 ,At4g29160 SNF7 family protein contains Pfam domain, PF03357: SNF7 family
		RAFL05-14-J24	At4g26750 / proline-rich protein family		RAFL05-14-J24 ,At4g26750 hydroxyproline-rich glycoprotein family protein
		RAFL11-01-P18	At4g31770 / calcineurin-like phosphoesterase family		At4g31770 ,RAFL11-01-P18 calcineurin-like phosphoesterase family protein contains Pfam profile: PF00149 calcineurin-like phosphoesterase
		RAFL08-16-I23	At4g01120 / G-box binding factor(bZIP protein), putative		RAFL08-16-I23 ,At4g01120 G-box binding factor 2 (GBF2) identical to G-box binding factor 2 (GBF2) SP:P42775 from [Arabidopsis thaliana];contains Pfam profile: PF00170 bZIP transcription factor
4_5100001_5130000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL06-16-C13	At4g09760 / choline kinase GmCK2p -related protein		At4g09760 ,RAFL06-16-C13 choline kinase, putative similar to GmCK2p choline kinase gi|1438881|gb|AAC49375
5_21540001_21570000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-19-N02	At5g53800 / expressed protein		At5g53800 ,RAFL05-19-N02 expressed protein
2_7770001_7800000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-20-P13	At2g18050 / histone H1		RAFL05-20-P13 ,At2g18050 histone H1-3 (HIS1-3) similar to histone H1 [Lycopersicon pennellii] SWISS-PROT:P40267; identical to cDNA histone H1-3 (His1-3) GI:1809314, histone H1-3 [Arabidopsis thaliana] GI:1809305
4_10770001_10800000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL04-20-J03	At4g22380 / Ribosomal protein L7Ae family		At4g22380 ,RAFL04-20-J03 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628.
5_16140001_16170000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-05-N17	At5g41040 / transferase family		At5g41040 ,RAFL05-05-N17 transferase family protein similar to hypersensitivity-related gene product HSR201 - Nicotiana tabacum, EMBL:X95343; contains Pfam transferase family domain PF00248
1_18000001_21000000					A	B	C	D	P	P'	N
	Cluster:0-2				9	70	115	4469	2.1293285E-4	0.006387986	30
		RAFL04-17-G02	At1g56340 / calreticulin 1 (CRT1)		At1g56340 ,RAFL04-17-G02 calreticulin 1 (CRT1) identical to calreticulin (crt1) GI:2052379 [Arabidopsis thaliana]
		RAFL06-15-G08	At1g52220 / expressed protein		At1g52220 ,RAFL06-15-G08 expressed protein
		RAFL05-17-G01	At1g51400 / photosystem II 5 KD protein		At1g51400 ,RAFL05-17-G01 photosystem II 5 kD protein 100% identical to GI:4836947 (F5D21.10)
		RAFL04-09-M24	At1g54500 / rubredoxin -related		At1g54500 ,RAFL04-09-M24 rubredoxin family protein similar to SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas}; contains Pfam profile PF00301: Rubredoxin
		RAFL05-19-G04	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL05-19-G04 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL05-04-A19	At1g51400 / photosystem II 5 KD protein		At1g51400 ,RAFL05-04-A19 photosystem II 5 kD protein 100% identical to GI:4836947 (F5D21.10)
		RAFL05-01-I05	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL05-01-I05 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL07-14-F21	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL07-14-F21 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL11-03-K23	At1g54500 / rubredoxin -related		At1g54500 ,RAFL11-03-K23 rubredoxin family protein similar to SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas}; contains Pfam profile PF00301: Rubredoxin
	Cluster:0-1				9	97	115	4442	0.0018587124	0.05576137	30
		RAFL03-06-N04	At1g55670 / photosystem I subunit V precursor -related		RAFL03-06-N04 ,At1g55670 photosystem I reaction center subunit V, chloroplast, putative / PSI-G, putative (PSAG) identical to SP|Q9S7N7; similar to SP|Q00327 Photosystem I reaction center subunit V, chloroplast precursor (PSI-G) (Photosystem I 9 kDa protein) {Hordeum vulgare}; contains Pfam profile PF01241: Photosystem I psaG / psaK
		RAFL05-04-D24	At1g52230 / photosystem I subunit VI precursor		At1g52230 ,RAFL05-04-D24 photosystem I reaction center subunit VI, chloroplast, putative / PSI-H, putative (PSAH2) identical to SP|Q9SUI6; similar to PSI-H precursor [Nicotiana sylvestris] GI:407355; contains Pfam profile PF03244: Photosystem I reaction centre subunit VI
		RAFL06-07-I03	At1g50900 / expressed protein		At1g50900 ,RAFL06-07-I03 expressed protein
		RAFL05-03-B20	At1g52400 / glycosyl hydrolase family 1, beta-glucosidase (BG1)		RAFL05-03-B20 ,At1g52400 glycosyl hydrolase family 1 protein / beta-glucosidase, putative (BG1) contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to GI:6651430 from [Arabidopsis thaliana]
		RAFL05-11-D11	At1g55490 / RuBisCo subunit binding-protein beta subunit/60 kDa chaperonin beta subunit		RAFL05-11-D11 ,At1g55490 RuBisCO subunit binding-protein beta subunit, chloroplast / 60 kDa chaperonin beta subunit / CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO subunit binding-protein beta subunit, chloroplast precursor (60 kDa chaperonin beta subunit, CPN-60 beta) [Arabidopsis thaliana]
		RAFL07-11-O20	At1g52980 / GTP-binding protein -related		At1g52980 ,RAFL07-11-O20 GTP-binding family protein contains Pfam domain, PF01926: GTPase of unknown function
		RAFL07-10-G07	At1g52400 / glycosyl hydrolase family 1, beta-glucosidase (BG1)		At1g52400 ,RAFL07-10-G07 glycosyl hydrolase family 1 protein / beta-glucosidase, putative (BG1) contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to GI:6651430 from [Arabidopsis thaliana]
		RAFL07-07-I23	At1g56190 / phosphoglycerate kinase -related		RAFL07-07-I23 ,At1g56190 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
		RAFL07-11-K16	At1g52000 / jacalin lectin family		At1g52000 ,RAFL07-11-K16 jacalin lectin family protein similar to myrosinase binding protein [Brassica napus] GI:1711296, myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile: PF01419 jacalin-like lectin domain
	Cluster:10-0				4	20	120	4519	0.0033508611	0.10052583	30
		RAFL05-04-I14	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL05-04-I14 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
		RAFL08-14-E03	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL08-14-E03 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
		RAFL06-13-J20	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL06-13-J20 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
		RAFL08-13-P06	At1g52690 / late embryogenesis abundant (LEA) protein, putative		At1g52690 ,RAFL08-13-P06 late embryogenesis abundant protein, putative / LEA protein, putative similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76) {Brassica napus}; contains Pfam profile PF02987: Late embryogenesis abundant protein
	Cluster:9-0				4	28	120	4511	0.00962857	0.2888571	30
		RAFL05-21-E06	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		At1g54100 ,RAFL05-21-E06 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
		RAFL04-09-D07	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		RAFL04-09-D07 ,At1g54100 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
		RAFL08-09-C23	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		RAFL08-09-C23 ,At1g54100 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
		RAFL08-15-L09	At1g54100 / aldehyde dehydrogenase, putative (ALDH)		RAFL08-15-L09 ,At1g54100 aldehyde dehydrogenase, putative / antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 26G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT:P25795
1_6930001_6960000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL09-11-P11	At1g20010 / tubulin beta-5 chain (TUB5)		RAFL09-11-P11 ,At1g20010 tubulin beta-5 chain (TUB5) nearly identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis thaliana}
2_270001_300000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL06-10-E23	At2g01660 / expressed protein		At2g01660 ,RAFL06-10-E23 33 kDa secretory protein-related contains Pfam PF01657: Domain of unknown function, duplicated in 33 KDa secretory proteins
4_5400001_5700000					A	B	C	D	P	P'	N
	Cluster:3-0				2	231	4	4426	0.032636177	0.1305447	4
		RAFL08-18-K16	At4g10480 / alpha NAC -related		RAFL08-18-K16 ,At4g10480 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative similar to alpha-NAC, non-muscle form [Mus musculus] GI:1666690; contains Pfam profiles PF01849: NAC domain, PF00627: UBA/TS-N domain
		RAFL05-12-D01	At4g10480 / alpha NAC -related		RAFL05-12-D01 ,At4g10480 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative similar to alpha-NAC, non-muscle form [Mus musculus] GI:1666690; contains Pfam profiles PF01849: NAC domain, PF00627: UBA/TS-N domain
	Cluster:2-1				2	242	4	4415	0.0355681	0.1422724	4
		RAFL04-13-M20	At4g11010 / nucleoside diphosphate kinase 3 (ndpk3)		At4g11010 ,RAFL04-13-M20 nucleoside diphosphate kinase 3, mitochondrial (NDK3) identical to Nucleoside diphosphate kinase III, mitochondrial precursor (NDK III) (NDP kinase III) (NDPK III) (SP:O49203) [Arabidopsis thaliana]; contains Pfam PF00334 : Nucleoside diphosphate kinase domain;
		RAFL05-21-M05	At4g10480 / alpha NAC -related		At4g10480 ,RAFL05-21-M05 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative similar to alpha-NAC, non-muscle form [Mus musculus] GI:1666690; contains Pfam profiles PF01849: NAC domain, PF00627: UBA/TS-N domain
2_17820001_17850000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-17-I08	At2g43020 / amine oxidase family		At2g43020 ,RAFL05-17-I08 amine oxidase family protein similar to polyamine oxidase SP:O64411 [Zea mays]; contains Pfam profile PF01593 amine oxidase, flavin-containing
5_7440001_7470000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	0	4554	0.02337551	0.02337551	1
		RAFL09-17-P13	At5g22500 / male sterility 2-related protein (emb|CAA68191.1)		At5g22500 ,RAFL09-17-P13 acyl CoA reductase, putative / male-sterility protein, putative similar to acyl CoA reductase [Simmondsia chinensis] GI:5020215; contains Pfam profile PF03015: Male sterility protein; identical to cDNA male sterility 2-like protein GI:1491614
2_12570001_12600000					A	B	C	D	P	P'	N
	Cluster:9-0				1	31	3	4628	0.027177518	0.10871007	4
		RAFL04-17-K13	At2g29460 / glutathione transferase, putative		RAFL04-17-K13 ,At2g29460 glutathione S-transferase, putative
5_23250001_23280000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	2	4582	0.049979966	0.1499399	3
		RAFL06-11-B13	At5g58250 / unknown protein (sp|P72777) -related		At5g58250 ,RAFL06-11-B13 expressed protein
3_3000001_6000000					A	B	C	D	P	P'	N
	Cluster:1-0				13	136	172	4342	0.007977094	0.255267	32
		RAFL06-08-E07	At3g11630 / 2-cys peroxiredoxin BAS1 precursor (thiol-specific antioxidant protein) -related		At3g11630 ,RAFL06-08-E07 2-cys peroxiredoxin, chloroplast (BAS1) identical to SP|Q96291 2-cys peroxiredoxin BAS1, chloroplast precursor {Arabidopsis thaliana}; contains Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific antioxidant) family
		RAFL09-11-D17	At3g12780 / phosphoglycerate kinase -related		RAFL09-11-D17 ,At3g12780 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
		RAFL02-08-J05	At3g17390 / s-adenosylmethionine synthetase -related		RAFL02-08-J05 ,At3g17390 S-adenosylmethionine synthetase, putative similar to S-adenosylmethionine synthetase 2 (Methionine adenosyltransferase 2, AdoMet synthetase 2) [Catharanthus roseus] SWISS-PROT:Q96552
		RAFL06-16-H23	At3g15030 / TCP family transcription factor, putative		At3g15030 ,RAFL06-16-H23 TCP family transcription factor, putative similar to TCP3 GB:AAC24010 [Arabidopsis thaliana]
		RAFL08-15-E10	At3g14420 / glycolate oxidase -related		At3g14420 ,RAFL08-15-E10 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative similar to (S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate oxidase, GOX) (Short chain alpha-hydroxy acid oxidase) [Spinacia oleracea] SWISS-PROT:P05414
		RAFL05-01-K06	At3g11170 / omega-3 fatty acid desaturase, chloroplast precursor (FAD7)		RAFL05-01-K06 ,At3g11170 omega-3 fatty acid desaturase, chloroplast (FAD7) (FADD) identical to omega-3 fatty acid desaturase, chloroplast precursor SP:P46310 [Arabidopsis thaliana (Mouse-ear cress)]; identical to Pfam profile PF00487: Fatty acid desaturase; identical to cDNA plastid fatty acid desaturase GI:809491
		RAFL05-12-C12	At3g17390 / s-adenosylmethionine synthetase -related		RAFL05-12-C12 ,At3g17390 S-adenosylmethionine synthetase, putative similar to S-adenosylmethionine synthetase 2 (Methionine adenosyltransferase 2, AdoMet synthetase 2) [Catharanthus roseus] SWISS-PROT:Q96552
		RAFL08-11-A20	At3g15850 / fatty acid desaturase family protein		RAFL08-11-A20 ,At3g15850 fatty acid desaturase family protein similar to delta 9 acyl-lipid desaturase (ADS1) GI:2970034 from [Arabidopsis thaliana]
		RAFL09-09-J21	At3g11700 / expressed protein		RAFL09-09-J21 ,At3g11700 beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein contains Pfam profile PF02469: Fasciclin domain
		RAFL09-13-P20	At3g14420 / glycolate oxidase -related		At3g14420 ,RAFL09-13-P20 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative similar to (S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate oxidase, GOX) (Short chain alpha-hydroxy acid oxidase) [Spinacia oleracea] SWISS-PROT:P05414
		RAFL05-04-C24	At3g13120 / chloroplast 30S ribosomal protein S10, putative		At3g13120 ,RAFL05-04-C24 30S ribosomal protein S10, chloroplast, putative similar to 30S ribosomal protein S10 GB:P02364 [Escherichia coli] (est matches suggest the N-terminal extension)
		RAFL04-09-O21	At3g16370 / GDSL-motif lipase/hydrolase protein		RAFL04-09-O21 ,At3g16370 GDSL-motif lipase/hydrolase family protein similar to family II lipases EXL3 GI:15054386, EXL1 GI:15054382, EXL2 GI:15054384 from [Arabidopsis thaliana]; contains Pfam profile: PF00657 Lipase Acylhydrolase with GDSL-like motif
		RAFL04-20-A09	At3g16370 / GDSL-motif lipase/hydrolase protein		RAFL04-20-A09 ,At3g16370 GDSL-motif lipase/hydrolase family protein similar to family II lipases EXL3 GI:15054386, EXL1 GI:15054382, EXL2 GI:15054384 from [Arabidopsis thaliana]; contains Pfam profile: PF00657 Lipase Acylhydrolase with GDSL-like motif
5_26100001_26400000					A	B	C	D	P	P'	N
	Cluster:9-0				2	30	19	4612	0.008833496	0.12366895	14
		RAFL05-03-I09	At5g66400 / dehydrin RAB18-related protein (sp P30185)		RAFL05-03-I09 ,At5g66400 dehydrin (RAB18) nearly identical to SP|P30185 Dehydrin Rab18 {Arabidopsis thaliana}
		RAFL08-10-E21	At5g66780 / expressed protein		At5g66780 ,RAFL08-10-E21 expressed protein
	Cluster:4-0				4	236	17	4406	0.020494834	0.28692767	14
		RAFL04-20-L08	At5g66040 / senescence-associated protein		RAFL04-20-L08 ,At5g66040 senescence-associated family protein almost identical to ketoconazole resistant protein GI:928938 from [Arabidopsis thaliana] full-length cDNA: Ceres:101608.
		RAFL08-08-F13	At5g66055 / expressed protein		At5g66055 ,RAFL08-08-F13 ankyrin repeat protein / AKRP (AKR) identical to ankyrin repeat protein (AKRP) [Arabidopsis thaliana] SWISS-PROT:Q05753
		RAFL06-10-I09	At5g66290 / hypothetical protein		RAFL06-10-I09 ,At5g66290 expressed protein
		RAFL04-20-B17	At5g66590 / pathogenesis-related protein family		RAFL04-20-B17 ,At5g66590 allergen V5/Tpx-1-related family protein contains similarity to SP|Q41495 STS14 protein precursor {Solanum tuberosum}; contains Pfam profile PF00188: SCP-like extracellular protein
5_18120001_18150000					A	B	C	D	P	P'	N
	Cluster:5-0				2	75	0	4586	2.6919477E-4	2.6919477E-4	1
		RAFL07-11-O11	At5g45430 / protein kinase, putative		At5g45430 ,RAFL07-11-O11 protein kinase, putative contains similarity to male germ cell-associated kinase [Homo sapiens] gi|23268497|gb|AAN16405
		RAFL07-18-J19	At5g45500 / expressed protein		At5g45500 ,RAFL07-18-J19 expressed protein weak similarity to resistance complex protein I2C-2 [Lycopersicon esculentum] GI:2258317
5_20460001_20490000					A	B	C	D	P	P'	N
	Cluster:9-1				2	94	0	4567	4.1952432E-4	4.1952432E-4	1
		RAFL09-15-D15	At5g51070 / ATP-dependent Clp protease ATP-binding subunit (ClpD), ERD1 protein precursor		At5g51070 ,RAFL09-15-D15 ATP-dependent Clp protease ATP-binding subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1 protein GI:497629, SP:P42762 from [Arabidopsis thaliana]; contains Pfam profile PF02861: Clp amino terminal domain
		RAFL05-05-I08	At5g51070 / ATP-dependent Clp protease ATP-binding subunit (ClpD), ERD1 protein precursor		At5g51070 ,RAFL05-05-I08 ATP-dependent Clp protease ATP-binding subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1 protein GI:497629, SP:P42762 from [Arabidopsis thaliana]; contains Pfam profile PF02861: Clp amino terminal domain
4_11970001_12000000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL04-10-E08	At4g25500 / arginine/serine-rich splicing factor RSp40		At4g25500 ,RAFL04-10-E08 arginine/serine-rich splicing factor RSP40 (RSP40) identical to SP|P92965 Arginine/serine-rich splicing factor RSP40 {Arabidopsis thaliana}
1_27900001_27930000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	1	4609	0.022605369	0.045210738	2
		RAFL04-15-A17	At1g75350 / chloroplast 50S ribosomal protein L31 -related		RAFL04-15-A17 ,At1g75350 ribosomal protein L31 family protein similar to SP:O46917 from [Guillardia theta]
3_17340001_17370000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	1	4556	0.044952307	0.089904614	2
		RAFL04-15-K17	At3g47070 / expressed protein		At3g47070 ,RAFL04-15-K17 expressed protein
1_23280001_23310000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-08-D17	At1g63720 / expressed protein		RAFL05-08-D17 ,At1g63720 expressed protein similar to putative protein GB:CAA18164 [Arabidopsis thaliana]
5_14010001_14040000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL07-14-E07	At5g36290 / transmembrane protein FT27/PFT27-related		At5g36290 ,RAFL07-14-E07 expressed protein contains Pfam profile PF01169: Uncharacterized protein family UPF0016
5_5070001_5100000					A	B	C	D	P	P'	N
	Cluster:8-2				2	60	0	4601	1.7397379E-4	1.7397379E-4	1
		RAFL05-02-G21	At5g15650 / reversibly glycosylated polypeptide-3		At5g15650 ,RAFL05-02-G21 reversibly glycosylated polypeptide-2 (RGP2) identical to reversibly glycosylated polypeptide-2 [Arabidopsis thaliana] GI:2317731
		RAFL11-05-M03	At5g15650 / reversibly glycosylated polypeptide-3		At5g15650 ,RAFL11-05-M03 reversibly glycosylated polypeptide-2 (RGP2) identical to reversibly glycosylated polypeptide-2 [Arabidopsis thaliana] GI:2317731
1_28620001_28650000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL07-16-P10	At1g77120 / alcohol dehydrogenase (ADH)		RAFL07-16-P10 ,At1g77120 alcohol dehydrogenase (ADH) identical to alcohol dehydrogenase GI:469467 from (Arabidopsis thaliana)
2_15720001_15750000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL04-16-P06	At2g37660 / expressed protein		At2g37660 ,RAFL04-16-P06 expressed protein
1_28860001_28890000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	0	4626	0.007934806	0.007934806	1
		RAFL09-07-M15	At1g77760 / nitrate reductase 1 (NR1)		RAFL09-07-M15 ,At1g77760 nitrate reductase 1 (NR1) identical to SP|P11832 Nitrate reductase 1 (formerly EC 1.6.6.1) (NR1){Arabidopsis thaliana}
5_4200001_4230000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-07-H19	At5g13190 / expressed protein		RAFL05-07-H19 ,At5g13190 expressed protein
4_15510001_15540000					A	B	C	D	P	P'	N
	Cluster:9-2				2	65	5	4591	0.004077173	0.024463037	6
		RAFL08-11-N01	At4g34710 / arginine decarboxylase SPE2		At4g34710 ,RAFL08-11-N01 arginine decarboxylase 2 (SPE2) identical to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19) (ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
		RAFL09-13-D07	At4g34710 / arginine decarboxylase SPE2		RAFL09-13-D07 ,At4g34710 arginine decarboxylase 2 (SPE2) identical to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19) (ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
4_6000001_9000000					A	B	C	D	P	P'	N
	Cluster:1-0				9	140	86	4428	0.0030741743	0.079928525	26
		RAFL11-05-E03	At4g17600 / Lil3 protein		RAFL11-05-E03 ,At4g17600 lil3 protein identical to Lil3 protein [Arabidopsis thaliana] gi|4741966|gb|AAD28780
		RAFL11-11-M03	At4g17600 / Lil3 protein		RAFL11-11-M03 ,At4g17600 lil3 protein identical to Lil3 protein [Arabidopsis thaliana] gi|4741966|gb|AAD28780
		RAFL06-10-B16	At4g17560 / ribosomal protein L19, putative		At4g17560 ,RAFL06-10-B16 ribosomal protein L19 family protein similar to plastid ribosomal protein L19 precursor [Spinacia oleracea] gi|7582403|gb|AAF64312
		RAFL05-17-O20	At4g12030 / bile acid:sodium symporter family		RAFL05-17-O20 ,At4g12030 bile acid:sodium symporter family protein low similarity to SP|Q12908 Ileal sodium/bile acid cotransporter {Homo sapiens}; contains Pfam profile PF01758: Sodium Bile acid symporter family
		RAFL04-17-B18	At4g13840 / transferase family		RAFL04-17-B18 ,At4g13840 transferase family protein low similarity to acetyl-CoA:benzylalcohol acetyltranferase [Clarkia concinna] GI:6166328; contains Pfam profile PF02458: Transferase family
		RAFL06-12-P08	At4g18030 / dehydration-induced protein family		At4g18030 ,RAFL06-12-P08 dehydration-responsive family protein similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase
		RAFL09-09-D17	At4g14960 / tubulin alpha-6 chain (TUA6)		At4g14960 ,RAFL09-09-D17 tubulin alpha-6 chain (TUA6) nearly identical to SP|P29511 Tubulin alpha-6 chain {Arabidopsis thaliana}
		RAFL09-06-N13	At4g14960 / tubulin alpha-6 chain (TUA6)		At4g14960 ,RAFL09-06-N13 tubulin alpha-6 chain (TUA6) nearly identical to SP|P29511 Tubulin alpha-6 chain {Arabidopsis thaliana}
		RAFL11-07-D18	At4g16370 / isp4 like protein		At4g16370 ,RAFL11-07-D18 oligopeptide transporter OPT family protein similar to oligopeptide transporter Opt1p [Candida albicans] GI:2367386; contains Pfam profile PF03169: OPT oligopeptide transporter protein
	Cluster:1-2				9	165	86	4403	0.00847757	0.22041681	26
		RAFL04-16-C09	At4g17520 / nuclear RNA binding protein, putative		RAFL04-16-C09 ,At4g17520 nuclear RNA-binding protein, putative similar to nuclear RNA binding protein GI:6492264 from [Arabidopsis thaliana]
		RAFL09-11-K06	At4g13930 / hydroxymethyltransferase		At4g13930 ,RAFL09-11-K06 glycine hydroxymethyltransferase, putative / serine hydroxymethyltransferase, putative / serine/threonine aldolase, putative similar to serine hydroxymethyltransferase [Chlamydomonas reinhardtii] GI:17066746; contains Pfam profile PF00464: serine hydroxymethyltransferase
		RAFL09-18-P13	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL09-18-P13 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
		RAFL11-07-F10	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL11-07-F10 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
		RAFL09-12-K14	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL09-12-K14 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
		RAFL09-14-M21	At4g16370 / isp4 like protein		At4g16370 ,RAFL09-14-M21 oligopeptide transporter OPT family protein similar to oligopeptide transporter Opt1p [Candida albicans] GI:2367386; contains Pfam profile PF03169: OPT oligopeptide transporter protein
		RAFL04-09-I24	At4g15540 / nodulin MtN21 - related		At4g15540 ,RAFL04-09-I24 nodulin-related low similarity to MtN21 [Medicago truncatula] GI:2598575
		RAFL05-01-M18	At4g13510 / ammonium transport protein (AMT1)		RAFL05-01-M18 ,At4g13510 ammonium transporter 1, member 1 (AMT1.1) identical to SP|P54144 High affinity ammonium transporter (AtAMT1;1) {Arabidopsis thaliana}
		RAFL09-16-C12	At4g14040 / selenium-binding protein like		At4g14040 ,RAFL09-16-C12 selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]
3_5940001_5970000					A	B	C	D	P	P'	N
	Cluster:1-0				2	147	0	4514	0.0010144025	0.0010144025	1
		RAFL02-08-J05	At3g17390 / s-adenosylmethionine synthetase -related		RAFL02-08-J05 ,At3g17390 S-adenosylmethionine synthetase, putative similar to S-adenosylmethionine synthetase 2 (Methionine adenosyltransferase 2, AdoMet synthetase 2) [Catharanthus roseus] SWISS-PROT:Q96552
		RAFL05-12-C12	At3g17390 / s-adenosylmethionine synthetase -related		RAFL05-12-C12 ,At3g17390 S-adenosylmethionine synthetase, putative similar to S-adenosylmethionine synthetase 2 (Methionine adenosyltransferase 2, AdoMet synthetase 2) [Catharanthus roseus] SWISS-PROT:Q96552
4_14850001_14880000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-09-J06	At4g32940 / gamma-VPE (vacuolar processing enzyme)		RAFL05-09-J06 ,At4g32940 vacuolar processing enzyme gamma / gamma-VPE nearly identical to SP|Q39119 Vacuolar processing enzyme, gamma-isozyme precursor (EC 3.4.22.-) (Gamma-VPE) {Arabidopsis thaliana}
5_360001_390000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	0	4620	0.009221531	0.009221531	1
		RAFL06-12-H12	At5g02020 / expressed protein		At5g02020 ,RAFL06-12-H12 expressed protein
4_4590001_4620000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL05-18-H22	At4g08870 / arginase -related		At4g08870 ,RAFL05-18-H22 arginase, putative similar to Swiss-Prot:P46637 arginase (EC 3.5.3.1) [Arabidopsis thaliana]
5_7470001_7500000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL04-09-L14	At5g22580 / expressed protein		RAFL04-09-L14 ,At5g22580 expressed protein
5_25590001_25620000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	2	4597	0.040621255	0.12186376	3
		RAFL05-09-M07	At5g64740 / cellulose synthase, catalytic subunit, putative		RAFL05-09-M07 ,At5g64740 cellulose synthase, catalytic subunit, putative similar to gi:2827141 cellulose synthase catalytic subunit (Ath-A), Arabidopsis thaliana
2_1710001_1740000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL06-09-E11	At2g04900 / expressed protein		At2g04900 ,RAFL06-09-E11 expressed protein
4_10380001_10410000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL09-07-E08	At4g21440 / myb family protein		At4g21440 ,RAFL09-07-E08 myb family transcription factor (MYB102) contains Pfam profile: PF00249 myb-like DNA-binding domain
1_21690001_21720000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL09-17-A17	At1g59900 / pyruvate dehydrogenase e1 alpha subunit -related		At1g59900 ,RAFL09-17-A17 pyruvate dehydrogenase E1 component alpha subunit, mitochondrial (PDHE1-A) identical to SP|P52901 Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor (EC 1.2.4.1) (PDHE1-A) {Arabidopsis thaliana}
3_15780001_15810000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL02-10-H10	At3g43980 / 40S ribosomal protein S29 (RPS29A)		At3g43980 ,RAFL02-10-H10 40S ribosomal protein S29 (RPS29A) ribosomal protein S29, rat, PIR:S30298
3_17460001_17490000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	1	4583	0.03360031	0.06720062	2
		RAFL04-17-P09	At3g47430 / expressed protein		At3g47430 ,RAFL04-17-P09 peroxisomal biogenesis factor 11 family protein / PEX11 family protein contains Pfam PF05648: Peroxisomal biogenesis factor 11 (PEX11)
1_3060001_3090000					A	B	C	D	P	P'	N
	Cluster:9-0				2	30	1	4630	1.3631E-4	2.7262E-4	2
		RAFL06-15-H16	At1g09500 / cinnamyl-alcohol dehydrogenase (CAD) family		At1g09500 ,RAFL06-15-H16 cinnamyl-alcohol dehydrogenase family / CAD family similar to cinnamyl alcohol dehydrogenase, Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna unguiculata [gi:1854445]
		RAFL05-18-A06	At1g09500 / cinnamyl-alcohol dehydrogenase (CAD) family		At1g09500 ,RAFL05-18-A06 cinnamyl-alcohol dehydrogenase family / CAD family similar to cinnamyl alcohol dehydrogenase, Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna unguiculata [gi:1854445]
3_4350001_4380000					A	B	C	D	P	P'	N
	Cluster:6-1				2	313	1	4347	0.013038642	0.026077284	2
		RAFL05-05-P01	At3g13410 / expressed protein		At3g13410 ,RAFL05-05-P01 expressed protein
		RAFL05-10-K07	At3g13445 / transcription initiation factor TFIID-1 (TATA sequence-binding protein 1)		RAFL05-10-K07 ,At3g13445 transcription initiation factor IID-1 (TFIID-1) / TATA-box factor 1 / TATA sequence-binding protein 1 (TBP1) identical to Swiss-Prot:P28147 transcription initiation factor TFIID-1 (TATA-box factor 1)(TATA sequence-binding protein 1) (TBP-1) [Arabidopsis thaliana]
4_13470001_13500000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-02-E04	At4g29590 / expressed protein		At4g29590 ,RAFL05-02-E04 expressed protein
2_16050001_16080000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL06-07-J20	At2g38530 / nonspecific lipid transfer protein 2 (LTP 2)		RAFL06-07-J20 ,At2g38530 nonspecific lipid transfer protein 2 (LTP2) identical to nonspecific lipid-transfer protein 2 from Arabidopsis thaliana [SP|Q9S7I3]; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
3_4710001_4740000					A	B	C	D	P	P'	N
	Cluster:0-0				1	35	0	4627	0.0077203517	0.0077203517	1
		RAFL09-06-D04	At3g14210 / myrosinase-associated protein, putative		RAFL09-06-D04 ,At3g14210 myrosinase-associated protein, putative similar to GB:CAA71238 from [Brassica napus]; contains Pfam profile:PF00657 Lipase/Acylhydrolase with GDSL-like motif
1_18450001_18480000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL06-07-I03	At1g50900 / expressed protein		At1g50900 ,RAFL06-07-I03 expressed protein
3_20700001_20730000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	1	4556	0.044952307	0.089904614	2
		RAFL05-12-O19	At3g55800 / sedoheptulose-bisphosphatase precursor		At3g55800 ,RAFL05-12-O19 sedoheptulose-1,7-bisphosphatase, chloroplast / sedoheptulose-bisphosphatase identical to SP|P46283 Sedoheptulose-1,7-bisphosphatase, chloroplast precursor (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPASE) (SED(1,7)P2ASE) {Arabidopsis thaliana}
5_21420001_21450000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL04-18-D08	At5g53490 / thylakoid lumenal 17.4 kD pentapeptide repeat family protein, chloroplast precursor		At5g53490 ,RAFL04-18-D08 thylakoid lumenal 17.4 kDa protein, chloroplast identical to SP:P81760 Thylakoid lumenal 17.4 kDa protein, chloroplast precursor (P17.4) {Arabidopsis thaliana}
1_10710001_10740000					A	B	C	D	P	P'	N
	Cluster:7-2				2	62	2	4597	0.0010932032	0.0032796096	3
		RAFL04-12-K17	At1g30360 / ERD4 protein		At1g30360 ,RAFL04-12-K17 early-responsive to dehydration stress protein (ERD4) nearly identical to ERD4 protein (early-responsive to dehydration stress) [Arabidopsis thaliana] GI:15375406; contains Pfam profile PF02714: Domain of unknown function DUF221
		RAFL11-06-I11	At1g30360 / ERD4 protein		At1g30360 ,RAFL11-06-I11 early-responsive to dehydration stress protein (ERD4) nearly identical to ERD4 protein (early-responsive to dehydration stress) [Arabidopsis thaliana] GI:15375406; contains Pfam profile PF02714: Domain of unknown function DUF221
5_7830001_7860000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	1	4595	0.028533451	0.057066903	2
		RAFL05-09-I02	At5g23340 / expressed protein		At5g23340 ,RAFL05-09-I02 expressed protein
5_16590001_16620000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	1	4585	0.032756753	0.06551351	2
		RAFL05-04-D03	At5g42270 / FtsH protease, putative		RAFL05-04-D03 ,At5g42270 FtsH protease, putative similar to FtsH protease GI:13183728 from [Medicago sativa]
2_1800001_2100000					A	B	C	D	P	P'	N
	Cluster:5-0				2	75	6	4580	0.00706652	0.04239912	6
		RAFL04-14-C14	At2g05100 / light-harvesting chlorophyll a/b binding protein		RAFL04-14-C14 ,At2g05100 chlorophyll A-B binding protein / LHCII type II (LHCB2.1) (LHCB2.3) identical to Lhcb2 protein [Arabidopsis thaliana] GI:4741948, GI:4741944; contains Pfam profile PF00504: Chlorophyll A-B binding protein
		RAFL05-01-K24	At2g05620 / expressed protein		RAFL05-01-K24 ,At2g05620 expressed protein
5_2910001_2940000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	0	4601	0.013296161	0.013296161	1
		RAFL06-07-I05	At5g09440 / expressed protein		At5g09440 ,RAFL06-07-I05 phosphate-responsive protein, putative similar to phi-1 (phosphate-induced gene) [Nicotiana tabacum] GI:3759184; contains Pfam profile PF04674: Phosphate-induced protein 1 conserved region
2_11100001_11400000					A	B	C	D	P	P'	N
	Cluster:10-2				2	107	11	4543	0.035702586	0.35702586	10
		RAFL08-12-H04	At2g26690 / nitrate transporter -related		RAFL08-12-H04 ,At2g26690 nitrate transporter (NTP2) identical to nitrate transporter (ntp2) [Arabidopsis thaliana] GI:4490321
		RAFL06-10-M04	At2g26800 / hydroxymethylglutaryl-CoA lyase -related		At2g26800 ,RAFL06-10-M04 hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative similar to SP|P35915 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) (HMG-CoA lyase) {Gallus gallus}; contains Pfam profile PF00682: HMGL-like
2_13590001_13620000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL09-09-E18	At2g32090 / glyoxalase family protein (lactoylglutathione lyase family protein)		RAFL09-09-E18 ,At2g32090 lactoylglutathione lyase family protein / glyoxalase I family protein contains glyoxalase family protein domain, Pfam:PF00903
1_25080001_25110000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	2	4608	0.033719275	0.10115783	3
		RAFL05-04-I18	At1g67850 / F12A21.2		RAFL05-04-I18 ,At1g67850 expressed protein contains Pfam profile PF05212: Protein of unknown function (DUF707)
5_630001_660000					A	B	C	D	P	P'	N
	Cluster:2-0				2	148	4	4509	0.014161414	0.056645654	4
		RAFL07-14-H10	At5g02870 / 60S ribosomal protein L4/L1 (RPL4D)		At5g02870 ,RAFL07-14-H10 60S ribosomal protein L4/L1 (RPL4D) 60S roibosomal protein L4, Arabidopsis thaliana, EMBL:CAA79104
		RAFL11-13-A04	At5g02870 / 60S ribosomal protein L4/L1 (RPL4D)		At5g02870 ,RAFL11-13-A04 60S ribosomal protein L4/L1 (RPL4D) 60S roibosomal protein L4, Arabidopsis thaliana, EMBL:CAA79104
	Cluster:2-1				2	242	4	4415	0.0355681	0.1422724	4
		RAFL07-14-M14	At5g02870 / 60S ribosomal protein L4/L1 (RPL4D)		At5g02870 ,RAFL07-14-M14 60S ribosomal protein L4/L1 (RPL4D) 60S roibosomal protein L4, Arabidopsis thaliana, EMBL:CAA79104
		RAFL09-12-B05	At5g02870 / 60S ribosomal protein L4/L1 (RPL4D)		At5g02870 ,RAFL09-12-B05 60S ribosomal protein L4/L1 (RPL4D) 60S roibosomal protein L4, Arabidopsis thaliana, EMBL:CAA79104
5_22200001_22500000					A	B	C	D	P	P'	N
	Cluster:5-0				5	72	7	4579	7.7957714E-7	6.236617E-6	8
		RAFL05-16-L15	At5g56010 / heat shock protein, putative		RAFL05-16-L15 ,At5g56010 heat shock protein, putative strong similarity to SP|P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein
		RAFL09-06-O18	At5g56030 / heat shock protein 81-2 (HSP81-2)		RAFL09-06-O18 ,At5g56030 heat shock protein 81-2 (HSP81-2) nearly identical to SP|P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}
		RAFL07-13-H08	At5g56010 / heat shock protein, putative		RAFL07-13-H08 ,At5g56010 heat shock protein, putative strong similarity to SP|P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein
		RAFL11-03-D07	At5g56000 / heat shock protein 81.4 (hsp81.4)		RAFL11-03-D07 ,At5g56000 heat shock protein 81-4 (HSP81-4) nearly identical to heat shock protein hsp81.4 [Arabidopsis thaliana] GI:1906828; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein
		RAFL04-15-M13	At5g56030 / heat shock protein 81-2 (HSP81-2)		RAFL04-15-M13 ,At5g56030 heat shock protein 81-2 (HSP81-2) nearly identical to SP|P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}
1_24630001_24660000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL06-12-I20	At1g66970 / expressed protein		At1g66970 ,RAFL06-12-I20 glycerophosphoryl diester phosphodiesterase family protein contains Pfam PF03009 : Glycerophosphoryl diester phosphodiesterase family
2_11190001_11220000					A	B	C	D	P	P'	N
	Cluster:0-2				1	78	0	4584	0.016941883	0.016941883	1
		RAFL05-03-B18	At2g26500 / expressed protein		RAFL05-03-B18 ,At2g26500 cytochrome b6f complex subunit (petM), putative nearly identical to cytochrome b6f complex subunit (GI:3090403) [Arabidopsis thaliana]; alternative splice forms exist
3_23040001_23070000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	2	4594	0.042497892	0.12749368	3
		RAFL06-13-K18	At3g62260 / protein phosphatase 2C (PP2C), putative		RAFL06-13-K18 ,At3g62260 protein phosphatase 2C, putative / PP2C, putative phosphoprotein phosphatase (EC 3.1.3.16) 1A-alpha - Homo sapiens, PIR:S22423
5_7200001_7500000					A	B	C	D	P	P'	N
	Cluster:5-1				3	279	10	4371	0.039814703	0.39814702	10
		RAFL04-17-B06	At5g22060 / DnaJ protein, putative		RAFL04-17-B06 ,At5g22060 DNAJ heat shock protein, putative strong similarity to SP|O60884 DnaJ homolog subfamily A member 2 (Dnj3) Homo sapiens, several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region
		RAFL07-08-I10	At5g22460 / esterase/lipase/thioesterase family		At5g22460 ,RAFL07-08-I10 esterase/lipase/thioesterase family protein low similarity to 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase [Rhodococcus sp. RHA1] GI:8978311, SP|Q02104 Lipase 1 precursor (EC 3.1.1.3) (Triacylglycerol lipase) {Psychrobacter immobilis}; contains Interpro entry IPR000379
		RAFL05-08-E17	At5g22330 / Ruv DNA-helicase-related protein		At5g22330 ,RAFL05-08-E17 TATA box-binding protein-interacting protein-related similar to TATA box-binding protein-interacting protein SP:O35753 from [ Mus musculus]
1_4770001_4800000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL05-05-E24	At1g13990 / expressed protein		At1g13990 ,RAFL05-05-E24 expressed protein
1_19290001_19320000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-14-M12	At1g52930 / expressed protein		RAFL04-14-M12 ,At1g52930 brix domain-containing protein contains Pfam domain, PF04427: Brix domain
1_2430001_2460000					A	B	C	D	P	P'	N
	Cluster:2-0				4	146	5	4508	1.1431223E-4	4.572489E-4	4
		RAFL08-18-F01	At1g07930 / elongation factor 1-alpha (EF-1-alpha)		RAFL08-18-F01 ,At1g07930 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
		RAFL09-13-F11	At1g07930 / elongation factor 1-alpha (EF-1-alpha)		RAFL09-13-F11 ,At1g07930 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
		RAFL07-17-I21	At1g07930 / elongation factor 1-alpha (EF-1-alpha)		RAFL07-17-I21 ,At1g07930 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
		RAFL08-09-H17	At1g07930 / elongation factor 1-alpha (EF-1-alpha)		RAFL08-09-H17 ,At1g07930 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990))
1_25410001_25440000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-01-L22	At1g68620 / expressed protein		RAFL05-01-L22 ,At1g68620 expressed protein similar to PrMC3 [Pinus radiata] GI:5487873
4_12870001_12900000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL04-14-N02	At4g27960 / ubiquitin-conjugating enzyme 9 (UBC9)		At4g27960 ,RAFL04-14-N02 ubiquitin-conjugating enzyme E2-17 kDa 9 (UBC9) E2; identical to gi:297883, SP:P35132; identical to cDNA UBC9 for ubiquitin conjugating enzyme homolog GI:297883
5_24660001_24690000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL06-13-P21	At5g62130 / expressed protein		At5g62130 ,RAFL06-13-P21 Per1-like protein-related
1_15990001_16020000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL05-21-I19	At1g43670 / fructose 1,6-bisphosphatase -related		RAFL05-21-I19 ,At1g43670 fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative very strong similarity to SP|P46267 Fructose-1,6-bisphosphatase, cytosolic (EC 3.1.3.11) (D-fructose-1,6- bisphosphate 1-phosphohydrolase) (FBPase) {Brassica napus}; contains Pfam profile PF00316: fructose-1,6-bisphosphatase
1_16200001_16500000					A	B	C	D	P	P'	N
	Cluster:0-1				2	104	3	4554	0.004895142	0.019580567	4
		RAFL05-18-I22	At1g44575 / photosystem II 22kDa protein -related		At1g44575 ,RAFL05-18-I22 photosystem II 22kDa protein, chloroplast / CP22 (PSBS) identical to photosystem II 22 kDa protein, chloroplast [precursor] SP:Q9XF91 from [Arabidopsis thaliana]; contains Pfam profile PF00504: Chlorophyll A-B binding protein
		RAFL06-13-A08	At1g44575 / photosystem II 22kDa protein -related		RAFL06-13-A08 ,At1g44575 photosystem II 22kDa protein, chloroplast / CP22 (PSBS) identical to photosystem II 22 kDa protein, chloroplast [precursor] SP:Q9XF91 from [Arabidopsis thaliana]; contains Pfam profile PF00504: Chlorophyll A-B binding protein
3_19950001_19980000					A	B	C	D	P	P'	N
	Cluster:2-1				2	242	1	4418	0.00789916	0.01579832	2
		RAFL05-07-H16	At3g53870 / 40S ribosomal protein S3 (RPS3B)		At3g53870 ,RAFL05-07-H16 40S ribosomal protein S3 (RPS3B) ribosomal protein S3a - Xenopus laevis, PIR:R3XL3A
		RAFL05-13-M17	At3g53890 / 40S ribosomal protein S21 homolog		RAFL05-13-M17 ,At3g53890 40S ribosomal protein S21 (RPS21B) ribosomal protein S21, cytosolic - Oryza sativa, PIR:S38357
1_26970001_27000000					A	B	C	D	P	P'	N
	Cluster:0-0				1	35	0	4627	0.0077203517	0.0077203517	1
		RAFL06-08-C15	At1g72610 / germin-like protein (AtGER1)		RAFL06-08-C15 ,At1g72610 germin-like protein (GER1) identical to germin-like protein subfamily 3 member 1 SP|P94040; contains Pfam profile: PF01072 Germin family
4_2100001_2400000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	1	4609	0.022605369	0.045210738	2
		RAFL04-12-C20	At4g04330 / expressed protein		RAFL04-12-C20 ,At4g04330 expressed protein
3_19230001_19260000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL06-13-H12	At3g51840 / acyl-coA dehydrogenase		At3g51840 ,RAFL06-13-H12 short-chain acyl-CoA oxidase identical to Short-chain acyl CoA oxidase [Arabidopsis thaliana] GI:5478795; contains InterPro entry IPR006089: Acyl-CoA dehydrogenase
1_5910001_5940000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	1	4609	0.022605369	0.045210738	2
		RAFL11-07-B20	At1g17330 / hypothetical protein		RAFL11-07-B20 ,At1g17330 metal-dependent phosphohydrolase HD domain-containing protein-related
5_16800001_17100000					A	B	C	D	P	P'	N
	Cluster:2-2				2	51	11	4599	0.009126297	0.07301038	8
		RAFL06-10-H13	At5g42650 / allene oxide synthase / cytochrome P450 74A		RAFL06-10-H13 ,At5g42650 allene oxide synthase (AOS) / hydroperoxide dehydrase / cytochrome P450 74A (CYP74A) identical to Allene oxide synthase, chloroplast precursor (Hydroperoxide dehydrase) (Cytochrome P450 74A) (SP:Q96242) {Arabidopsis thaliana}
		RAFL05-12-G03	At5g42650 / allene oxide synthase / cytochrome P450 74A		At5g42650 ,RAFL05-12-G03 allene oxide synthase (AOS) / hydroperoxide dehydrase / cytochrome P450 74A (CYP74A) identical to Allene oxide synthase, chloroplast precursor (Hydroperoxide dehydrase) (Cytochrome P450 74A) (SP:Q96242) {Arabidopsis thaliana}
3_19380001_19410000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-17-A01	At3g52300 / expressed protein		RAFL05-17-A01 ,At3g52300 ATP synthase D chain-related contains weak similarity to ATP synthase D chain, mitochondrial (EC 3.6.3.14) (Swiss-Prot:P31399) [Rattus norvegicus]
5_16800001_16830000					A	B	C	D	P	P'	N
	Cluster:2-2				2	51	0	4610	1.267773E-4	1.267773E-4	1
		RAFL06-10-H13	At5g42650 / allene oxide synthase / cytochrome P450 74A		RAFL06-10-H13 ,At5g42650 allene oxide synthase (AOS) / hydroperoxide dehydrase / cytochrome P450 74A (CYP74A) identical to Allene oxide synthase, chloroplast precursor (Hydroperoxide dehydrase) (Cytochrome P450 74A) (SP:Q96242) {Arabidopsis thaliana}
		RAFL05-12-G03	At5g42650 / allene oxide synthase / cytochrome P450 74A		At5g42650 ,RAFL05-12-G03 allene oxide synthase (AOS) / hydroperoxide dehydrase / cytochrome P450 74A (CYP74A) identical to Allene oxide synthase, chloroplast precursor (Hydroperoxide dehydrase) (Cytochrome P450 74A) (SP:Q96242) {Arabidopsis thaliana}
5_19530001_19560000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL04-15-L12	At5g48930 / anthranilate N-hydroxycinnamoyl/benzoyltransferase family		RAFL04-15-L12 ,At5g48930 transferase family protein similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus [GI:3288180, GI:2239091]; contains Pfam profile PF02458 transferase family
2_3000001_6000000					A	B	C	D	P	P'	N
	Cluster:0-0				2	34	9	4618	0.003051236	0.024409888	8
		RAFL06-16-M15	At2g10940 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At2g10940 ,RAFL06-16-M15 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to proline-rich cell wall protein [Medicago sativa] GI:3818416; contains Pfam profile PF00234 Protease inhibitor/seed storage/LTP family
		RAFL06-08-D09	At2g10940 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At2g10940 ,RAFL06-08-D09 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to proline-rich cell wall protein [Medicago sativa] GI:3818416; contains Pfam profile PF00234 Protease inhibitor/seed storage/LTP family
5_24600001_24630000					A	B	C	D	P	P'	N
	Cluster:6-2				3	173	1	4486	2.0567402E-4	4.1134804E-4	2
		RAFL05-05-M22	At5g61990 / pentatricopeptide (PPR) repeat-containing protein		At5g61990 ,RAFL05-05-M22 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
		RAFL07-10-G12	At5g62010 / unknown similar to AGI		At5g62010 ,RAFL07-10-G12 http://rarge.gsc.riken.go.jp/microarray/microarray_data2.pl?ALL_EX=on&NC_FLAG=display&LOG=on&ID=RAFL07-10-G12
		RAFL04-09-J03	At5g62010 / unknown similar to AGI		At5g62010 ,RAFL04-09-J03 http://rarge.gsc.riken.go.jp/microarray/microarray_data2.pl?ALL_EX=on&NC_FLAG=display&LOG=on&ID=RAFL04-09-J03
5_12360001_12390000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL06-07-E13	At5g33320 / triose phosphate/phosphate translocator, putative		At5g33320 ,RAFL06-07-E13 triose phosphate/phosphate translocator, putative similar to SWISS-PROT:P52178 triose phosphate/phosphate translocator [Cauliflower] {Brassica oleracea}
1_3810001_3840000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL08-08-I15	At1g11360 / expressed protein		RAFL08-08-I15 ,At1g11360 universal stress protein (USP) family protein contains Pfam PF00582: universal stress protein family domain; similar to ethylene-responsive ER6 protein (GI:5669654) [Lycopersicon esculentum]
3_22650001_22680000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	2	4584	0.04873567	0.146207	3
		RAFL07-08-A21	At3g61220 / short-chain dehydrogenase/reductase family protein		At3g61220 ,RAFL07-08-A21 short-chain dehydrogenase/reductase (SDR) family protein similar to carbonyl reductase GI:1049108 from [Mus musculus]
5_24030001_24060000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL06-16-A10	At5g60490 / fasciclin-like arabinogalactan-protein (FLA12)		RAFL06-16-A10 ,At5g60490 fasciclin-like arabinogalactan-protein (FLA12)
1_5490001_5520000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-14-C07	At1g16030 / heat shock protein hsp70b		RAFL05-14-C07 ,At1g16030 heat shock protein 70, putative / HSP70, putative similar to heat shock protein hsp70 GI:1771478 from [Pisum sativum]
2_9510001_9540000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	2	4594	0.042497892	0.12749368	3
		RAFL05-09-N09	At2g22500 / mitochondrial carrier protein family		At2g22500 ,RAFL05-09-N09 mitochondrial substrate carrier family protein contains Pfam profile: PF00153 mitochondrial carrier protein
4_8700001_9000000					A	B	C	D	P	P'	N
	Cluster:1-0				4	145	12	4502	0.0013500572	0.016200686	12
		RAFL11-05-E03	At4g17600 / Lil3 protein		RAFL11-05-E03 ,At4g17600 lil3 protein identical to Lil3 protein [Arabidopsis thaliana] gi|4741966|gb|AAD28780
		RAFL11-11-M03	At4g17600 / Lil3 protein		RAFL11-11-M03 ,At4g17600 lil3 protein identical to Lil3 protein [Arabidopsis thaliana] gi|4741966|gb|AAD28780
		RAFL06-10-B16	At4g17560 / ribosomal protein L19, putative		At4g17560 ,RAFL06-10-B16 ribosomal protein L19 family protein similar to plastid ribosomal protein L19 precursor [Spinacia oleracea] gi|7582403|gb|AAF64312
		RAFL06-12-P08	At4g18030 / dehydration-induced protein family		At4g18030 ,RAFL06-12-P08 dehydration-responsive family protein similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase
3_22050001_22080000					A	B	C	D	P	P'	N
	Cluster:6-0				1	139	0	4523	0.03002359	0.03002359	1
		RAFL04-17-C18	At3g59690 / expressed protein		At3g59690 ,RAFL04-17-C18 calmodulin-binding family protein similar to SF16 protein [Helianthus annuus] GI:560150; contains Pfam profile PF00612: IQ calmodulin-binding motif
4_1500001_1530000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL05-17-C10	At4g03420 / expressed protein		At4g03420 ,RAFL05-17-C10 expressed protein
4_16200001_16500000					A	B	C	D	P	P'	N
	Cluster:0-1				2	104	13	4544	0.04433326	0.39899936	9
		RAFL04-14-H12	At4g36540 / expressed protein		At4g36540 ,RAFL04-14-H12 basic helix-loop-helix (bHLH) family protein contains Pfam domain, PF00010: Helix-loop-helix DNA-binding domain
		RAFL07-16-J11	At4g36870 / BEL1-like homeobox 2 protein (BLH2)		RAFL07-16-J11 ,At4g36870 BEL1-like homeobox 2 protein (BLH2)
1_9300001_9330000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	1	4585	0.032756753	0.06551351	2
		RAFL06-09-N14	At1g26920 / expressed protein		RAFL06-09-N14 ,At1g26920 expressed protein Location of EST 228A16T7A, gb|N65686
1_14100001_14400000					A	B	C	D	P	P'	N
	Cluster:5-2				3	123	3	4534	3.6307445E-4	0.0014522978	4
		RAFL09-13-L09	At1g37130 / nitrate reductase 2 (NR2)		At1g37130 ,RAFL09-13-L09 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
		RAFL09-11-J22	At1g37130 / nitrate reductase 2 (NR2)		At1g37130 ,RAFL09-11-J22 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
		RAFL11-09-K10	At1g37130 / nitrate reductase 2 (NR2)		At1g37130 ,RAFL11-09-K10 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
2_2100001_2400000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	2	4597	0.040621255	0.12186376	3
		RAFL06-16-J10	At2g06050 / 12-oxophytodienoate reductase (OPR3)(DDE1)		RAFL06-16-J10 ,At2g06050 12-oxophytodienoate reductase (OPR3) / delayed dehiscence1 (DDE1) nearly identical to DELAYED DEHISCENCE1 [GI:7688991] and to OPR3 [GI:10242314]; contains Pfam profile PF00724:oxidoreductase, FAD/FMN-binding; identical to cDNA OPDA-reductase homolog GI:5059114
1_15660001_15690000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	0	4596	0.014368433	0.014368433	1
		RAFL05-18-N16	At1g42990 / bZIP family transcription factor		At1g42990 ,RAFL05-18-N16 bZIP transcription factor family protein contains Pfam profile: PF00170: bZIP transcription factor
4_780001_810000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-14-A18	At4g01850 / S-adenosylmethionine synthase 2		At4g01850 ,RAFL05-14-A18 S-adenosylmethionine synthetase 2 (SAM2) identical to S-adenosylmethionine synthetase 2 (Methionine adenosyltransferase 2, AdoMet synthetase 2) [Arabidopsis thaliana] SWISS-PROT:P17562
2_17610001_17640000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	1	4585	0.032756753	0.06551351	2
		RAFL05-11-I16	At2g42490 / copper amine oxidase -related		At2g42490 ,RAFL05-11-I16 copper amine oxidase, putative similar to copper methylamine oxidase precursor (MAOXII) [Arthrobacter sp.] SWISS-PROT:Q07123
4_14040001_14070000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-07-H10	At4g30990 / hypothetical protein		At4g30990 ,RAFL05-07-H10 expressed protein ; expression supported by MPSS
5_2700001_2730000					A	B	C	D	P	P'	N
	Cluster:3-1				2	214	0	4447	0.0021362621	0.0021362621	1
		RAFL04-13-O20	At5g08420 / rev interacting protein mis3 - like		At5g08420 ,RAFL04-13-O20 expressed protein
		RAFL04-20-G24	At5g08400 / expressed protein		RAFL04-20-G24 ,At5g08400 expressed protein predicted proteins, Arabidopsis thaliana and Synechocystis sp.
5_21900001_22200000					A	B	C	D	P	P'	N
	Cluster:4-0				5	235	12	4411	0.0012869332	0.009008532	7
		RAFL06-07-B07	At5g55190 / GTP-binding protein atran3, putative		RAFL06-07-B07 ,At5g55190 Ras-related GTP-binding protein (RAN3) identical to atran3 [Arabidopsis thaliana] GI:2058280
		RAFL05-17-L19	At5g55160 / ubiquitin-like protein SMT3, putative		At5g55160 ,RAFL05-17-L19 small ubiquitin-like modifier 2 (SUMO) similar to ubiquitin-like protein SMT3 SP:P55852 from [Arabidopsis thaliana]; identical to cDNA small ubiquitin-like modifier 2 (SUMO) GI:22652843; contains Pfam profile PF00240: Ubiquitin family
		RAFL06-15-K24	At5g54750 / transport protein particle component Bet3p-related protein		RAFL06-15-K24 ,At5g54750 transport protein particle (TRAPP) component Bet3, putative similar to SP|P36149 Transport protein particle 22 kDa subunit (TRAPP 22 kDa subunit) {Saccharomyces cerevisiae}; contains Pfam profile PF04051: Transport protein particle (TRAPP) component, Bet3
		RAFL06-16-L13	At5g54960 / pyruvate decarboxylase (gb|AAB16855.1)		RAFL06-16-L13 ,At5g54960 pyruvate decarboxylase, putative strong similarity to pyruvate decarboxylase 1 [Vitis vinifera] GI:10732644; contains InterPro entry IPR000399: Pyruvate decarboxylase
		RAFL05-17-C16	At5g55190 / GTP-binding protein atran3, putative		RAFL05-17-C16 ,At5g55190 Ras-related GTP-binding protein (RAN3) identical to atran3 [Arabidopsis thaliana] GI:2058280
	Cluster:7-1				4	261	13	4385	0.0134790605	0.09435342	7
		RAFL11-06-H06	At5g54650 / formin homology 2 (FH2) domain-containing protein		RAFL11-06-H06 ,At5g54650 formin homology 2 domain-containing protein / FH2 domain-containing protein contains formin homology 2 domain, Pfam:PF02181
		RAFL06-13-G07	At5g54855 / expressed protein		At5g54855 ,RAFL06-13-G07 pollen Ole e 1 allergen and extensin family protein contains Pfam domain, PF01190: Pollen proteins Ole e I family
		RAFL09-12-N24	At5g54810 / tryptophan synthase, beta subunit 1 (TSB1)		At5g54810 ,RAFL09-12-N24 tryptophan synthase, beta subunit 1 (TSB1) identical to SP|P14671
		RAFL05-07-E06	At5g55100 / expressed protein		RAFL05-07-E06 ,At5g55100 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein contains Pfam domain PF01805: Surp module
1_25380001_25410000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL04-17-A15	At1g68580 / expressed protein		At1g68580 ,RAFL04-17-A15 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein contains Pfam profile PF01426: BAH domain and PF05641: Agenet domain
4_16200001_16230000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL04-14-H12	At4g36540 / expressed protein		At4g36540 ,RAFL04-14-H12 basic helix-loop-helix (bHLH) family protein contains Pfam domain, PF00010: Helix-loop-helix DNA-binding domain
3_19140001_19170000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	1	4585	0.032756753	0.06551351	2
		RAFL06-12-D06	At3g51600 / nonspecific lipid transfer protein 5 (LTP 5)		At3g51600 ,RAFL06-12-D06 nonspecific lipid transfer protein 5 (LTP5) identical to SP|Q9XFS7 Nonspecific lipid-transfer protein 5 (LTP 5) {Arabidopsis thaliana}
4_16800001_16830000					A	B	C	D	P	P'	N
	Cluster:8-0				3	106	0	4554	1.243132E-5	1.243132E-5	1
		RAFL08-11-O11	At4g37980 / mannitol dehydrogenase (ELI3-1), putative		At4g37980 ,RAFL08-11-O11 mannitol dehydrogenase, putative (ELI3-1) identical to GI:16267
		RAFL08-08-M18	At4g37980 / mannitol dehydrogenase (ELI3-1), putative		At4g37980 ,RAFL08-08-M18 mannitol dehydrogenase, putative (ELI3-1) identical to GI:16267
		RAFL09-16-M04	At4g37980 / mannitol dehydrogenase (ELI3-1), putative		At4g37980 ,RAFL09-16-M04 mannitol dehydrogenase, putative (ELI3-1) identical to GI:16267
3_6960001_6990000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL08-12-L05	At3g20000 / membrane import protein -related		RAFL08-12-L05 ,At3g20000 porin family protein low similarity to haymaker protein [Mus musculus] GI:17834089, mitochondrial outer membrane protein MOM35 [Mus musculus] GI:6650562; contains Pfam profile PF01459: Eukaryotic porin
5_18240001_18270000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	0	4610	0.011366073	0.011366073	1
		RAFL05-01-H15	At5g45680 / immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase		RAFL05-01-H15 ,At5g45680 FK506-binding protein 1 (FKBP13) identical to Probable FKBP-type peptidyl-prolyl cis-trans isomerase 3, chloroplast precursor (Ppiase) (Rotamase) (SP:Q9SCY2) / FK506 binding protein 1 (GI:21535744) [Arabidopsis thaliana]; contains Pfam PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type
1_10500001_10800000					A	B	C	D	P	P'	N
	Cluster:7-2				2	62	7	4592	0.00627458	0.04392206	7
		RAFL04-12-K17	At1g30360 / ERD4 protein		At1g30360 ,RAFL04-12-K17 early-responsive to dehydration stress protein (ERD4) nearly identical to ERD4 protein (early-responsive to dehydration stress) [Arabidopsis thaliana] GI:15375406; contains Pfam profile PF02714: Domain of unknown function DUF221
		RAFL11-06-I11	At1g30360 / ERD4 protein		At1g30360 ,RAFL11-06-I11 early-responsive to dehydration stress protein (ERD4) nearly identical to ERD4 protein (early-responsive to dehydration stress) [Arabidopsis thaliana] GI:15375406; contains Pfam profile PF02714: Domain of unknown function DUF221
5_8550001_8580000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL04-17-N23	At5g24930 / CONSTANS B-box zinc finger family protein		RAFL04-17-N23 ,At5g24930 zinc finger (B-box type) family protein similar to CONSTANS-like protein 1 GI:4091804 from [Malus x domestica]
4_5040001_5070000					A	B	C	D	P	P'	N
	Cluster:0-1				1	105	0	4557	0.022732146	0.022732146	1
		RAFL06-07-K18	At4g09650 / H+-transporting ATP synthase-related protein		At4g09650 ,RAFL06-07-K18 ATP synthase delta chain, chloroplast, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative similar to SP|P32980 ATP synthase delta chain, chloroplast precursor (EC 3.6.3.14) {Nicotiana tabacum}; contains Pfam profile PF00213: ATP synthase F1, delta subunit
3_19710001_19740000					A	B	C	D	P	P'	N
	Cluster:9-2				2	65	0	4596	2.034141E-4	2.034141E-4	1
		RAFL08-17-D17	At3g53180 / nodulin / glutamate-ammonia ligase - like protein		RAFL08-17-D17 ,At3g53180 glutamine synthetase, putative similar to glutamine synthetase (glutamate--ammonia ligase) [Bacillus subtilis] SWISS-PROT:P12425
		RAFL06-09-F14	At3g53180 / nodulin / glutamate-ammonia ligase - like protein		RAFL06-09-F14 ,At3g53180 glutamine synthetase, putative similar to glutamine synthetase (glutamate--ammonia ligase) [Bacillus subtilis] SWISS-PROT:P12425
3_6000001_9000000					A	B	C	D	P	P'	N
	Cluster:3-2				7	30	123	4503	5.706903E-5	0.0015979329	28
		RAFL09-06-N12	At3g23810 / S-adenosyl-L-homocysteinas -related		At3g23810 ,RAFL09-06-N12 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL09-13-P13	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL09-13-P13 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL07-09-L01	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL07-09-L01 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
		RAFL05-02-I24	At3g20390 / translational inhibitor protein -related		At3g20390 ,RAFL05-02-I24 endoribonuclease L-PSP family protein contains Pfam domain PF01042: Endoribonuclease L-PSP
		RAFL09-16-F08	At3g23820 / NAD-dependent epimerase/dehydratase family		At3g23820 ,RAFL09-16-F08 NAD-dependent epimerase/dehydratase family protein similar to nucleotide sugar epimerase from Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF [Escherichia coli] GI:5739472, CAPI protein {Staphylococcus aureus} SP|P39858; contains Pfam profile: PF01370 NAD dependent epimerase/dehydratase family
		RAFL09-07-D12	At3g23820 / NAD-dependent epimerase/dehydratase family		At3g23820 ,RAFL09-07-D12 NAD-dependent epimerase/dehydratase family protein similar to nucleotide sugar epimerase from Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF [Escherichia coli] GI:5739472, CAPI protein {Staphylococcus aureus} SP|P39858; contains Pfam profile: PF01370 NAD dependent epimerase/dehydratase family
		RAFL09-10-M18	At3g23810 / S-adenosyl-L-homocysteinas -related		RAFL09-10-M18 ,At3g23810 adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative strong similarity to SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain
	Cluster:1-1				7	98	123	4435	0.026404485	0.7393256	28
		RAFL05-17-A02	At3g20810 / expressed protein		At3g20810 ,RAFL05-17-A02 transcription factor jumonji (jmjC) domain-containing protein contains Pfam domain PF02373: jmjC domain
		RAFL07-14-J18	At3g23530 / cyclopropane synthase, putative		RAFL07-14-J18 ,At3g23530 cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative similar to cyclopropane synthase [Sterculia foetida] GI:21069167; contains Pfam profiles PF02353: Cyclopropane-fatty-acyl-phospholipid synthase, PF01593: amine oxidase, flavin-containing
		RAFL09-10-N16	At3g18000 / phosphoethanolamine N-methyltransferase, putative		RAFL09-10-N16 ,At3g18000 phosphoethanolamine N-methyltransferase 1 / PEAMT 1 (NMT1) identical to Phosphoethanolamine N-methyltransferase 1 (EC 2.1.1.103) (PEAMT 1) (AtNMT1) (SP:Q9FR44){Arabidopsis thaliana}; strong similarity to phosphoethanolamine N-methyltransferase from [Spinacia oleracea] GI:7407189, [Triticum aestivum] GI:17887465; contains Pfam profile PF01209: methlytransferase, UbiE/COQ5 family
		RAFL05-19-J04	At3g24430 / mrp protein -related		RAFL05-19-J04 ,At3g24430 expressed protein contains Pfam profile PF01883: Domain of unknown function
		RAFL04-14-G15	At3g22780 / DNA binding protein -related		RAFL04-14-G15 ,At3g22780 CXC domain protein (TSO1) identical to CXC domain protein TSO1 [Arabidopsis thaliana] GI:7767425
		RAFL07-18-P15	At3g22120 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		At3g22120 ,RAFL07-18-P15 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein Lycopersicon esculentum, proline-rich cell wall protein [Medicago sativa] GI:3818416; contains Pfam profile PF00234 Protease inhibitor/seed storage/LTP family
		RAFL05-17-H07	At3g17840 / leucine-rich repeat transmembrane protein kinase, putative		At3g17840 ,RAFL05-17-H07 leucine-rich repeat transmembrane protein kinase, putative similar to receptor kinase GB:AAA33715 from [Petunia integrifolia]
	Cluster:2-1				12	232	118	4301	0.0452302	1.2664456	28
		RAFL07-18-J07	At3g23530 / cyclopropane synthase, putative		RAFL07-18-J07 ,At3g23530 cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative similar to cyclopropane synthase [Sterculia foetida] GI:21069167; contains Pfam profiles PF02353: Cyclopropane-fatty-acyl-phospholipid synthase, PF01593: amine oxidase, flavin-containing
		RAFL04-13-D06	At3g23940 / dihydroxyacid dehydratase -related		RAFL04-13-D06 ,At3g23940 dehydratase family contains Pfam profile: PF00920 dehydratase family
		RAFL09-07-D04	At3g22230 / 60S ribosomal protein L27 (RPL27B)		At3g22230 ,RAFL09-07-D04 60S ribosomal protein L27 (RPL27B) similar to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum tuberosum]
		RAFL06-16-M11	At3g18780 / actin 2		At3g18780 ,RAFL06-16-M11 actin 2 (ACT2) identical to SP|Q96292 Actin 2 {Arabidopsis thaliana}; nearly identical to SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and to At1g49240
		RAFL07-08-E22	At3g23530 / cyclopropane synthase, putative		RAFL07-08-E22 ,At3g23530 cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative similar to cyclopropane synthase [Sterculia foetida] GI:21069167; contains Pfam profiles PF02353: Cyclopropane-fatty-acyl-phospholipid synthase, PF01593: amine oxidase, flavin-containing
		RAFL06-08-P08	At3g23390 / 60S ribosomal protein L36a/L44 (RPL36aA)		RAFL06-08-P08 ,At3g23390 60S ribosomal protein L36a/L44 (RPL36aA) similar to ribosomal protein L41 GB:AAA34366 from [Candida maltosa]
		RAFL05-12-K04	At3g23050 / auxin-responsive protein IAA7 (Indoleacetic acid-induced protein 7)		RAFL05-12-K04 ,At3g23050 auxin-responsive protein / indoleacetic acid-induced protein 7 (IAA7) identical to SP|Q38825|AXI7_ARATH Auxin-responsive protein IAA7 (Indoleacetic acid-induced protein 7)
		RAFL05-21-L03	At3g23400 / plastid-lipid associated protein PAP/fibrillin family		RAFL05-21-L03 ,At3g23400 plastid-lipid associated protein PAP / fibrillin family protein contains Pfam profile PF04755: PAP_fibrillin
		RAFL05-21-D08	At3g18490 / chloroplast nucleoid DNA-binding protein -related		At3g18490 ,RAFL05-21-D08 aspartyl protease family protein contains Pfam domain, PF00026: eukaryotic aspartyl protease
		RAFL04-16-M03	At3g20790 / expressed protein		At3g20790 ,RAFL04-16-M03 oxidoreductase family protein weak similarity to SP|Q07982 Glucose--fructose oxidoreductase precursor (EC 1.1.99.28) {Zymomonas mobilis}; contains Pfam profiles PF01408: Oxidoreductase family NAD-binding Rossmann fold, PF02894: Oxidoreductase family C-terminal alpha/beta domain
		RAFL07-12-K04	At3g20050 / T-complex protein 1, alpha subunit/chaperonin		RAFL07-12-K04 ,At3g20050 T-complex protein 1 alpha subunit / TCP-1-alpha / chaperonin (CCT1) identical to SWISS-PROT:P28769- T-complex protein 1, alpha subunit (TCP-1-alpha) [Arabidopsis thaliana]
		RAFL11-10-K08	At3g22230 / 60S ribosomal protein L27 (RPL27B)		At3g22230 ,RAFL11-10-K08 60S ribosomal protein L27 (RPL27B) similar to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum tuberosum]
3_5580001_5610000					A	B	C	D	P	P'	N
	Cluster:2-0				2	148	2	4511	0.00591059	0.017731769	3
		RAFL04-15-D12	At3g16460 / jacalin lectin family		At3g16460 ,RAFL04-15-D12 jacalin lectin family protein contains Pfam profile: PF01419 jacalin-like lectin domain; similar to myrosinase binding protein [Brassica napus] GI:1711296, GI:1655824, myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile PF01419 jacalin-like lectin family
		RAFL03-03-J03	At3g16450 / jacalin lectin family		At3g16450 ,RAFL03-03-J03 jacalin lectin family protein similar to SP|Q9SAV1 Myrosinase binding protein-like At1g52030 {Arabidopsis thaliana}; contains Pfam profile: PF01419 jacalin-like lectin domain
5_25620001_25650000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-03-E09	At5g64860 / glycosyl hydrolase family 77 (4-alpha-glucanotransferase)		At5g64860 ,RAFL05-03-E09 4-alpha-glucanotransferase, putative / disproportionating enzyme, putative similar to 4-alpha-glucanotransferase SP:Q06801 from [Solanum tuberosum]
3_4200001_4230000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	1	4609	0.022605369	0.045210738	2
		RAFL04-17-H16	At3g13110 / serine acetyltransferase (Sat-1)		RAFL04-17-H16 ,At3g13110 serine O-acetyltransferase (SAT-1) identical to serine acetyltransferase (Sat-1) GI:1184048 [Arabidopsis thaliana]
1_7650001_7680000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	0	4620	0.009221531	0.009221531	1
		RAFL08-15-M21	At1g21790 / expressed protein		At1g21790 ,RAFL08-15-M21 expressed protein
4_8550001_8580000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	0	4610	0.011366073	0.011366073	1
		RAFL06-16-M17	At4g17090 / glycosyl hydrolase family 14 (beta-amylase)		At4g17090 ,RAFL06-16-M17 beta-amylase (CT-BMY) / 1,4-alpha-D-glucan maltohydrolase identical to beta-amylase enzyme GI:6065749 from [Arabidopsis thaliana]
3_15600001_15630000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	0	4626	0.007934806	0.007934806	1
		RAFL05-09-N18	At3g43720 / protease inhibitor/seed storage/lipid transfer protein (LTP) family		RAFL05-09-N18 ,At3g43720 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
2_18720001_18750000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL09-09-M22	At2g45600 / expressed protein		At2g45600 ,RAFL09-09-M22 expressed protein low similarity to PrMC3 [Pinus radiata] GI:5487873
4_14940001_14970000					A	B	C	D	P	P'	N
	Cluster:9-0				1	31	0	4631	0.0068625347	0.0068625347	1
		RAFL05-02-O17	At4g33150 / lysine-ketoglutarate reductase/saccharopine		At4g33150 ,RAFL05-02-O17 lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme identical to lysine-ketoglutarate reductase/saccharopine dehydrogenase GI:2052508 from [Arabidopsis thaliana]
2_17400001_17700000					A	B	C	D	P	P'	N
	Cluster:3-0				3	230	12	4418	0.03588357	0.39471924	11
		RAFL06-09-K10	At2g41960 / expressed protein		At2g41960 ,RAFL06-09-K10 expressed protein
		RAFL05-21-P13	At2g42600 / phosphoenolpyruvate carboxylase		At2g42600 ,RAFL05-21-P13 phosphoenolpyruvate carboxylase, putative / PEP carboxylase, putative (PPC2) strong similarity to phosphoenolpyruvate carboxylase [Brassica napus] GI:507808; contains Pfam profile PF00311: phosphoenolpyruvate carboxylase
		RAFL08-09-E20	At2g41840 / 40S ribosomal protein S2 (RPS2C)		RAFL08-09-E20 ,At2g41840 40S ribosomal protein S2 (RPS2C)
	Cluster:7-1				3	262	12	4386	0.049681213	0.54649335	11
		RAFL09-10-C07	At2g42030 / C3HC4-type zinc finger protein family		At2g42030 ,RAFL09-10-C07 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)
		RAFL08-11-N21	At2g42270 / U5 small nuclear ribonucleoprotein helicase, putative		RAFL08-11-N21 ,At2g42270 U5 small nuclear ribonucleoprotein helicase, putative
		RAFL05-02-C24	At2g41900 / CCCH-type zinc finger protein -related		At2g41900 ,RAFL05-02-C24 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) and Pfam domain, PF00023: Ankyrin repeat
5_2100001_2400000					A	B	C	D	P	P'	N
	Cluster:2-1				3	241	9	4410	0.021903817	0.19713435	9
		RAFL08-15-K17	At5g07090 / 40S ribosomal protein S4 (RPS4B)		At5g07090 ,RAFL08-15-K17 40S ribosomal protein S4 (RPS4B)
		RAFL08-14-N17	At5g07020 / proline-rich protein family		RAFL08-14-N17 ,At5g07020 proline-rich family protein
		RAFL05-12-E19	At5g07340 / calnexin, putative		At5g07340 ,RAFL05-12-E19 calnexin, putative identical to calnexin homolog 2 from Arabidopsis thaliana [SP|Q38798], strong similarity to calnexin homolog 1, Arabidopsis thaliana, EMBL:AT08315 [SP|P29402]; contains Pfam profile PF00262 calreticulin family
	Cluster:1-1				2	103	10	4548	0.028613875	0.25752488	9
		RAFL04-15-E20	At5g07240 / expressed protein		At5g07240 ,RAFL04-15-E20 calmodulin-binding family protein contains Pfam profile PF00612: IQ calmodulin-binding motif
		RAFL04-10-L09	At5g07030 / nucleoid DNA-binding-related protein		RAFL04-10-L09 ,At5g07030 aspartyl protease family protein contains Pfam profile:PF00026 eukaryotic aspartyl protease
4_4740001_4770000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL04-15-N07	At4g09040 / RNA recognition motif (RRM) - containing protein		At4g09040 ,RAFL04-15-N07 RNA recognition motif (RRM)-containing protein low similarity to enhancer binding protein-1; EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28 kDa ribonucleoprotein, chloroplast precursor (28RNP) {Nicotiana sylvestris}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM)
3_17580001_17610000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-04-L01	At3g47670 / pectinesterase family		At3g47670 ,RAFL05-04-L01 invertase/pectin methylesterase inhibitor family protein similar to pectinesterase from Arabidopsis thaliana SP|Q43867, Phaseolus vulgaris SP|Q43111; contains Pfam profile PF04043: Plant invertase/pectin methylesterase inhibitor
3_20400001_20700000					A	B	C	D	P	P'	N
	Cluster:3-2				2	35	12	4614	0.0052507473	0.063008964	12
		RAFL06-08-F13	At3g55360 / 3-oxo-5-alpha-steroid 4-dehydrogenase (steroid 5-alpha-reductase) family		At3g55360 ,RAFL06-08-F13 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein similar to synaptic glycoprotein SC2 spliced variant from Homo sapiens [EMBL:AF038958], SC2 from Rattus sp. [gi:256994]; contains Pfam 3-oxo-5-alpha-steroid 4-dehydrogenase domain PF02544
		RAFL05-07-N10	At3g55130 / ABC transporter family protein		At3g55130 ,RAFL05-07-N10 ABC transporter family protein breast cancer resistance protein 1 BCRP1, Mus musculus, EMBL:NP_036050
1_20310001_20340000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-04-O09	At1g55530 / expressed protein		At1g55530 ,RAFL05-04-O09 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger)
3_20760001_20790000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	0	4599	0.013725069	0.013725069	1
		RAFL08-18-O11	At3g55980 / expressed protein		At3g55980 ,RAFL08-18-O11 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) and Pfam domain, PF00023: Ankyrin repeat
1_27300001_27600000					A	B	C	D	P	P'	N
	Cluster:4-0				3	237	9	4414	0.020962995	0.20962994	10
		RAFL09-14-N04	At1g73590 / auxin transporter splice variant b -related		At1g73590 ,RAFL09-14-N04 auxin efflux carrier protein, putative (PIN1) identical to putative auxin efflux carrier protein; AtPIN1 [Arabidopsis thaliana] GI:4151319; contains Pfam profile PF03547: Auxin Efflux Carrier
		RAFL04-17-F10	At1g74230 / glycine-rich RNA-binding protein		RAFL04-17-F10 ,At1g74230 glycine-rich RNA-binding protein similar to RNA-binding protein GB:S46286 from [Nicotiana sylvestris]
		RAFL11-02-J06	At1g74050 / 60S ribosomal protein L6 (RPL6C)		At1g74050 ,RAFL11-02-J06 60S ribosomal protein L6 (RPL6C) similar to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309 from [Cyanophora paradoxa]
5_20790001_20820000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-07-I02	At5g51940 / DNA-directed RNA polymerase II subunit-related protein		RAFL05-07-I02 ,At5g51940 DNA-directed RNA polymerase II, putative similar to SP|O88828 DNA-directed RNA polymerase II 14.4 kDa polypeptide (EC 2.7.7.6) (RPB6) (RPB14.4) {Rattus norvegicus}; contains Pfam profile PF01192: RNA polymerases K / 14 to 18 kDa subunit
1_23250001_23280000					A	B	C	D	P	P'	N
	Cluster:2-0				1	149	0	4513	0.03216813	0.03216813	1
		RAFL06-07-N12	At1g63690 / expressed protein		At1g63690 ,RAFL06-07-N12 protease-associated (PA) domain-containing protein contains protease associated (PA) domain, Pfam:PF02225
3_930001_960000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	1	4557	0.04453306	0.08906612	2
		RAFL11-05-E10	At3g03770 / leucine-rich repeat transmembrane protein kinase, putative		At3g03770 ,RAFL11-05-E10 leucine-rich repeat transmembrane protein kinase, putative may contain C-terminal ser/thr protein kinase domain, similar to serine/threonine protein kinase Pto GB:AAB47421 [Lycopersicon esculentum]
5_22380001_22410000					A	B	C	D	P	P'	N
	Cluster:5-0				5	72	1	4585	6.383303E-9	1.2766606E-8	2
		RAFL05-16-L15	At5g56010 / heat shock protein, putative		RAFL05-16-L15 ,At5g56010 heat shock protein, putative strong similarity to SP|P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein
		RAFL09-06-O18	At5g56030 / heat shock protein 81-2 (HSP81-2)		RAFL09-06-O18 ,At5g56030 heat shock protein 81-2 (HSP81-2) nearly identical to SP|P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}
		RAFL07-13-H08	At5g56010 / heat shock protein, putative		RAFL07-13-H08 ,At5g56010 heat shock protein, putative strong similarity to SP|P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein
		RAFL11-03-D07	At5g56000 / heat shock protein 81.4 (hsp81.4)		RAFL11-03-D07 ,At5g56000 heat shock protein 81-4 (HSP81-4) nearly identical to heat shock protein hsp81.4 [Arabidopsis thaliana] GI:1906828; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein
		RAFL04-15-M13	At5g56030 / heat shock protein 81-2 (HSP81-2)		RAFL04-15-M13 ,At5g56030 heat shock protein 81-2 (HSP81-2) nearly identical to SP|P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}
2_11280001_11310000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	1	4553	0.0462095	0.092419	2
		RAFL08-12-H04	At2g26690 / nitrate transporter -related		RAFL08-12-H04 ,At2g26690 nitrate transporter (NTP2) identical to nitrate transporter (ntp2) [Arabidopsis thaliana] GI:4490321
1_17370001_17400000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-14-A14	At1g48210 / serine/threonine protein kinase, putative		RAFL05-14-A14 ,At1g48210 serine/threonine protein kinase, putative similar to Pto kinase interactor 1 [Lycopersicon esculentum] gi|3668069|gb|AAC61805; contains protein kinase domain, Pfam:PF00069
5_15000001_18000000					A	B	C	D	P	P'	N
	Cluster:0-0				14	22	93	4534	1.1793967E-14	3.1843712E-13	27
		RAFL06-14-C19	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL06-14-C19 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL09-16-C21	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL09-16-C21 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL06-13-H11	At5g38430 / ribulose bisphosphate carboxylase small chain 1b precursor (RuBisCO small subunit 1b) (sp|P10796)		RAFL06-13-H11 ,At5g38430 ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) identical to SP|P10796 Ribulose bisphosphate carboxylase small chain 1B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1B) {Arabidopsis thaliana}
		RAFL04-15-J15	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		At5g38410 ,RAFL04-15-J15 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL06-10-C06	At5g42530 / expressed protein		At5g42530 ,RAFL06-10-C06 expressed protein
		RAFL06-10-O15	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL06-10-O15 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL07-12-I10	At5g42010 / expressed protein		At5g42010 ,RAFL07-12-I10 WD-40 repeat family protein contains Pfam PF00400: WD domain, G-beta repeat; similar to WD-repeat protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo sapiens]
		RAFL08-17-J10	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL08-17-J10 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL06-08-L09	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL06-08-L09 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL06-14-L16	At5g38430 / ribulose bisphosphate carboxylase small chain 1b precursor (RuBisCO small subunit 1b) (sp|P10796)		At5g38430 ,RAFL06-14-L16 ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) identical to SP|P10796 Ribulose bisphosphate carboxylase small chain 1B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1B) {Arabidopsis thaliana}
		RAFL09-09-K05	At5g38410 / ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO small subunit 3b) (sp|P10798)		RAFL09-09-K05 ,At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to SP|P10798 Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis thaliana}
		RAFL07-11-L12	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL07-11-L12 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL07-14-L17	At5g38420 / ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO small subunit 2b) (sp|P10797)		At5g38420 ,RAFL07-14-L17 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to SP|P10797 Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) {Arabidopsis thaliana}
		RAFL04-13-P21	At5g42530 / expressed protein		At5g42530 ,RAFL04-13-P21 expressed protein
	Cluster:6-1				14	301	93	4255	0.016745122	0.45211828	27
		RAFL05-10-P24	At5g40890 / CLC-a chloride channel protein		At5g40890 ,RAFL05-10-P24 chloride channel protein (CLC-a) identical to GI:1742952 (gb|AAC05742.1)
		RAFL05-14-B01	At5g42980 / thioredoxin H-type 3 (TRX-H-3)		RAFL05-14-B01 ,At5g42980 thioredoxin H-type 3 (TRX-H-3) (GIF1) identical to SP|Q42403 Thioredoxin H-type 3 (TRX-H-3) {Arabidopsis thaliana}; identical to cDNA (GIF1) mRNA for thioredoxin GI:992961
		RAFL09-06-P04	At5g39730 / avirulence induced gene (AIG) - like protein		At5g39730 ,RAFL09-06-P04 avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related similar to SP|P54121 AIG2 protein {Arabidopsis thaliana}
		RAFL05-14-O08	At5g39950 / thioredoxin H-type 2 (TRX-H-2)		At5g39950 ,RAFL05-14-O08 thioredoxin H-type 2 (TRX-H-2) (Gif2) identical to SP|Q38879 Thioredoxin H-type 2 (TRX-H-2) {Arabidopsis thaliana}; identical to cDNA (Gif2) mRNA for thioredoxin GI:992963
		RAFL04-20-N11	At5g41370 / TFIIH basal transcription factor complex helicase XPB subunit, putative		At5g41370 ,RAFL04-20-N11 DNA repair protein, putative / TFIIH basal transcription factor complex helicase XPB subunit, putative (XPB1) contains Pfam profile PF00271:Helicase conserved C-terminal domain; identical to cDNA putative DNA repair protein (XPB1) GI:10314019
		RAFL06-09-A21	At5g40580 / 20S proteasome beta subunit B (PBB2)		At5g40580 ,RAFL06-09-A21 20S proteasome beta subunit B (PBB2) (PRCFC) identical to 20S proteasome beta subunit PBB2 [Arabidopsis thaliana] GI:3421104, cDNA proteasome subunit prcfc GI:2511575
		RAFL07-12-M14	At5g42390 / pitrilysin		At5g42390 ,RAFL07-12-M14 metalloendopeptidase identical to chloroplast processing enzyme metalloendopeptidase [Arabidopsis thaliana] gi|2827039|gb|AAC39482
		RAFL06-16-H05	At5g40730 / arabinogalactan-protein (AGP24)		RAFL06-16-H05 ,At5g40730 arabinogalactan-protein (AGP24)
		RAFL09-12-L08	At5g38470 / DNA repair protein RAD23, putative		RAFL09-12-L08 ,At5g38470 DNA repair protein RAD23, putative similar to DNA repair by nucleotide excision (NER) RAD23 protein, isoform I GI:1914683 from [Daucus carota]
		RAFL06-12-E24	At5g42790 / 20S proteasome alpha subunit F1 (PAF1)		At5g42790 ,RAFL06-12-E24 20S proteasome alpha subunit F1 (PAF1) (gb|AAC32062.1)
		RAFL11-01-O04	At5g42520 / expressed protein		RAFL11-01-O04 ,At5g42520 expressed protein
		RAFL11-10-D22	At5g43280 / enoyl-CoA hydratase/isomerase family		RAFL11-10-D22 ,At5g43280 enoyl-CoA hydratase/isomerase family protein similar to Delta 3,5-delta2,4-dienoyl-CoA isomerase, mitochondrial (ECH1) from Rattus norvegicus [SP|Q62651], from Homo sapiens [SP|Q13011]; contains Pfam profile PF00378 enoyl-CoA hydratase/isomerase family protein
		RAFL05-07-C04	At5g40740 / expressed protein		RAFL05-07-C04 ,At5g40740 expressed protein
		RAFL04-13-C05	At5g43780 / ATP sulfurylase precursor (gb|AAD26634.1)		At5g43780 ,RAFL04-13-C05 sulfate adenylyltransferase 4 / ATP-sulfurylase 4 (APS4) identical to ATP sulfurylase precursor (APS4) [Arabidopsis thaliana] GI:4633131
	Cluster:8-0				6	103	101	4453	0.03824088	1.0325037	27
		RAFL05-19-D06	At5g39590 / expressed protein		At5g39590 ,RAFL05-19-D06 expressed protein
		RAFL05-13-B03	At5g43850 / expressed protein		RAFL05-13-B03 ,At5g43850 acireductone dioxygenase (ARD/ARD') family protein similar to iron-deficiency induced gene [Hordeum vulgare] GI:14522834, SIPL [Homo sapiens] GI:16551383; contains Pfam profile PF03079: ARD/ARD' family
		RAFL05-05-N17	At5g41040 / transferase family		At5g41040 ,RAFL05-05-N17 transferase family protein similar to hypersensitivity-related gene product HSR201 - Nicotiana tabacum, EMBL:X95343; contains Pfam transferase family domain PF00248
		RAFL08-08-L16	At5g39590 / expressed protein		RAFL08-08-L16 ,At5g39590 expressed protein
		RAFL04-17-M08	At5g43450 / 2-oxoglutarate-dependent dioxygenase, putative		RAFL04-17-M08 ,At5g43450 2-oxoglutarate-dependent dioxygenase, putative similar to 2A6 (GI:599622) and tomato ethylene synthesis regulatory protein E8 (SP|P10967)
		RAFL06-15-G18	At5g42380 / calmodulin-related protein, putative		RAFL06-15-G18 ,At5g42380 calmodulin-related protein, putative similar to regulator of gene silencing calmodulin-related protein GI:12963415 from [Nicotiana tabacum]
5_900001_930000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL05-04-E03	At5g03560 / expressed protein		At5g03560 ,RAFL05-04-E03 expressed protein
1_9750001_9780000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL03-05-O03	At1g28050 / CONSTANS B-box zinc finger family protein		At1g28050 ,RAFL03-05-O03 zinc finger (B-box type) family protein
4_8700001_8730000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL08-16-G17	At4g17500 / ethylene responsive element binding factor 1 (frameshift !)		RAFL08-16-G17 ,At4g17500 ethylene-responsive element-binding protein 1 (ERF1) / EREBP-2 protein identical to SP|O80337 Ethylene responsive element binding factor 1 (EREBP-2 protein) [Arabidopsis thaliana]; a false single bp exon was added to circumvent a single basepair insertion in the genomic sequence, supported by cDNA/genome alignment.
4_16560001_16590000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	0	4554	0.02337551	0.02337551	1
		RAFL05-02-B21	At4g37430 / cytochrome P450 91A2		RAFL05-02-B21 ,At4g37430 cytochrome P450 81F1 (CYP81F1) (CYP91A2) identical to cytochrome P450 81F1 (91A2) (SP:O65790) [Arabidopsis thaliana]
2_12000001_12030000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL09-12-N06	At2g28305 / expressed protein		At2g28305 ,RAFL09-12-N06 expressed protein contains Pfam profile PF03641: decarboxylase family protein
5_13710001_13740000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL05-02-H10	At5g35840 / phytochrome C (PHYC)		RAFL05-02-H10 ,At5g35840 phytochrome C (PHYC) identical to SP|P14714 Phytochrome C {Arabidopsis thaliana}
1_7920001_7950000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL04-18-L02	At1g22500 / RING-H2 zinc finger protein ATL5 -related		At1g22500 ,RAFL04-18-L02 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097: Zinc finger, C3HC4 type (RING finger)
1_18900001_19200000					A	B	C	D	P	P'	N
	Cluster:0-1				4	102	7	4550	7.364662E-5	5.155263E-4	7
		RAFL05-04-D24	At1g52230 / photosystem I subunit VI precursor		At1g52230 ,RAFL05-04-D24 photosystem I reaction center subunit VI, chloroplast, putative / PSI-H, putative (PSAH2) identical to SP|Q9SUI6; similar to PSI-H precursor [Nicotiana sylvestris] GI:407355; contains Pfam profile PF03244: Photosystem I reaction centre subunit VI
		RAFL05-03-B20	At1g52400 / glycosyl hydrolase family 1, beta-glucosidase (BG1)		RAFL05-03-B20 ,At1g52400 glycosyl hydrolase family 1 protein / beta-glucosidase, putative (BG1) contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to GI:6651430 from [Arabidopsis thaliana]
		RAFL07-10-G07	At1g52400 / glycosyl hydrolase family 1, beta-glucosidase (BG1)		At1g52400 ,RAFL07-10-G07 glycosyl hydrolase family 1 protein / beta-glucosidase, putative (BG1) contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to GI:6651430 from [Arabidopsis thaliana]
		RAFL07-11-K16	At1g52000 / jacalin lectin family		At1g52000 ,RAFL07-11-K16 jacalin lectin family protein similar to myrosinase binding protein [Brassica napus] GI:1711296, myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile: PF01419 jacalin-like lectin domain
	Cluster:1-0				2	147	9	4505	0.04617144	0.32320008	7
		RAFL08-09-I24	At1g52040 / jacalin lectin family		RAFL08-09-I24 ,At1g52040 jacalin lectin family protein nearly identical to myrosinase-binding protein homolog GI:2997767 from [Arabidopsis thaliana]; contains Pfam profile PF01419 jacalin-like lectin domain; identical to cDNA myrosinase-binding protein homolog GI:2997766
		RAFL09-14-K04	At1g52040 / jacalin lectin family		At1g52040 ,RAFL09-14-K04 jacalin lectin family protein nearly identical to myrosinase-binding protein homolog GI:2997767 from [Arabidopsis thaliana]; contains Pfam profile PF01419 jacalin-like lectin domain; identical to cDNA myrosinase-binding protein homolog GI:2997766
3_6210001_6240000					A	B	C	D	P	P'	N
	Cluster:4-1				2	308	2	4351	0.024166461	0.07249938	3
		RAFL08-11-G19	At3g18165 / expressed protein		At3g18165 ,RAFL08-11-G19 expressed protein similar to DAM1 (GI:3985930) [Homo sapiens]; contains Pfam profile PF05700: Breast carcinoma amplified sequence 2 (BCAS2)
		RAFL05-04-O11	At3g18190 / chaperonin, putative		At3g18190 ,RAFL05-04-O11 chaperonin, putative similar to SWISS-PROT:P50991- T-complex protein 1, delta subunit (TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
1_25740001_25770000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL09-13-J20	At1g69410 / Eukaryotic initiation factor 5A -related		RAFL09-13-J20 ,At1g69410 eukaryotic translation initiation factor 5A, putative / eIF-5A, putative strong similarity to eukaryotic initiation factor 5A (2) (Nicotiana plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) {Lycopersicon esculentum}
1_8430001_8460000					A	B	C	D	P	P'	N
	Cluster:6-2				1	175	0	4487	0.03774394	0.03774394	1
		RAFL08-09-I21	At1g23880 / expressed protein		At1g23880 ,RAFL08-09-I21 NHL repeat-containing protein contains Pfam profile PF01436: NHL repeat
1_24000001_24300000					A	B	C	D	P	P'	N
	Cluster:2-0				3	147	11	4502	0.009149455	0.0823451	9
		RAFL09-07-F20	At1g65930 / isocitrate dehydrogenase (NADP+), putative		At1g65930 ,RAFL09-07-F20 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative strong similarity to isocitrate dehydrogenase SP|Q40345 from [Medicago sativa]
		RAFL09-06-L20	At1g65930 / isocitrate dehydrogenase (NADP+), putative		At1g65930 ,RAFL09-06-L20 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative strong similarity to isocitrate dehydrogenase SP|Q40345 from [Medicago sativa]
		RAFL09-11-A18	At1g65930 / isocitrate dehydrogenase (NADP+), putative		RAFL09-11-A18 ,At1g65930 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative strong similarity to isocitrate dehydrogenase SP|Q40345 from [Medicago sativa]
	Cluster:6-1				4	311	10	4338	0.011896291	0.10706662	9
		RAFL04-09-A20	At1g65720 / expressed protein		At1g65720 ,RAFL04-09-A20 expressed protein
		RAFL04-17-H05	At1g65650 / expressed protein		At1g65650 ,RAFL04-17-H05 ubiquitin carboxyl-terminal hydrolase family 1 protein similar to 26S proteasome regulatory complex subunit p37A [Drosophila melanogaster] GI:6434962; contains Pfam profile PF01088: Ubiquitin carboxyl-terminal hydrolase, family 1
		RAFL04-20-K18	At1g65980 / type 2 peroxiredoxin -related		RAFL04-20-K18 ,At1g65980 peroxiredoxin type 2, putative strong similarity to type 2 peroxiredoxin [Brassica rapa subsp. pekinensis] GI:4928472; contains Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific antioxidant) family
		RAFL02-10-H06	At1g65820 / microsomal glutathione s-transferase, putative		RAFL02-10-H06 ,At1g65820 microsomal glutathione s-transferase, putative similar to MGST3_HUMAN SP:O14880
2_16890001_16920000					A	B	C	D	P	P'	N
	Cluster:2-1				2	242	2	4417	0.01525385	0.045761548	3
		RAFL06-13-E16	At2g40630 / expressed protein		At2g40630 ,RAFL06-13-E16 expressed protein
		RAFL04-14-J20	At2g40660 / methionyl-tRNA synthetase -related		RAFL04-14-J20 ,At2g40660 tRNA-binding region domain-containing protein similar to SP|Q12904 Multisynthetase complex auxiliary component p43 [Contains: Endothelial-monocyte activating polypeptide II (EMAP-II) (Small inducible cytokine subfamily E member 1)] {Homo sapiens}; contains Pfam profile PF01588: Putative tRNA binding domain
1_660001_690000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-16-O07	At1g02930 / glutathione transferase, putative		At1g02930 ,RAFL05-16-O07 glutathione S-transferase, putative similar to glutathione S-transferase GI:860955 from [Hyoscyamus muticus]
4_11040001_11070000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	2	4597	0.040621255	0.12186376	3
		RAFL05-18-D20	At4g23060 / expressed protein		At4g23060 ,RAFL05-18-D20 calmodulin-binding family protein contains Pfam profile PF00612: IQ calmodulin-binding motif
4_6300001_6330000					A	B	C	D	P	P'	N
	Cluster:10-2				1	108	0	4554	0.02337551	0.02337551	1
		RAFL07-14-D12	At4g12430 / trehalose-6-phosphate phosphatase, putative		At4g12430 ,RAFL07-14-D12 trehalose-6-phosphate phosphatase, putative similar to trehalose-6-phosphate phosphatase (AtTPPB) [Arabidopsis thaliana] GI:2944180; contains Pfam profile PF02358: Trehalose-phosphatase
1_6600001_6900000					A	B	C	D	P	P'	N
	Cluster:9-2				3	64	6	4590	2.2394971E-4	0.001567648	7
		RAFL09-09-P15	At1g19180 / expressed protein		RAFL09-09-P15 ,At1g19180 expressed protein
		RAFL06-10-F03	At1g19180 / expressed protein		RAFL06-10-F03 ,At1g19180 expressed protein
		RAFL05-02-L02	At1g19180 / expressed protein		RAFL05-02-L02 ,At1g19180 expressed protein
3_15900001_16200000					A	B	C	D	P	P'	N
	Cluster:8-0				2	107	3	4551	0.005170766	0.020683063	4
		RAFL06-13-E03	At3g44300 / nitrilase 2		RAFL06-13-E03 ,At3g44300 nitrilase 2 (NIT2) identical to SP|P32962 Nitrilase 2 (EC 3.5.5.1) {Arabidopsis thaliana}
		RAFL08-10-H06	At3g44300 / nitrilase 2		RAFL08-10-H06 ,At3g44300 nitrilase 2 (NIT2) identical to SP|P32962 Nitrilase 2 (EC 3.5.5.1) {Arabidopsis thaliana}
1_19920001_19950000					A	B	C	D	P	P'	N
	Cluster:0-2				2	77	1	4583	8.409994E-4	0.0016819988	2
		RAFL04-09-M24	At1g54500 / rubredoxin -related		At1g54500 ,RAFL04-09-M24 rubredoxin family protein similar to SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas}; contains Pfam profile PF00301: Rubredoxin
		RAFL11-03-K23	At1g54500 / rubredoxin -related		At1g54500 ,RAFL11-03-K23 rubredoxin family protein similar to SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas}; contains Pfam profile PF00301: Rubredoxin
5_3390001_3420000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL09-06-K06	At5g10730 / expressed protein		RAFL09-06-K06 ,At5g10730 expressed protein
5_13530001_13560000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	0	4610	0.011366073	0.011366073	1
		RAFL04-16-N11	At5g35630 / glutamate-ammonia ligase (EC 6.3.1.2) precursor, chloroplast (clone lambdaAtgsl1) (pir||S18600)		At5g35630 ,RAFL04-16-N11 glutamine synthetase (GS2) identical to glutamine synthetase, chloroplast precursor (glutamate-- ammonia ligase, GS2) [Arabidopsis thaliana] SWISS-PROT:Q43127
1_2670001_2700000					A	B	C	D	P	P'	N
	Cluster:3-0				2	231	5	4425	0.044206142	0.2210307	5
		RAFL07-11-D02	At1g08520 / magnesium-chelatase, subunit chlD, chloroplast (Mg-protoporphyrin IX chelatase) (CHLD), putative		RAFL07-11-D02 ,At1g08520 magnesium-chelatase subunit chlD, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLD) similar to Mg-chelatase SP|O24133 from Nicotiana tabacum, GB:AF014399 GI:2318116 from [Pisum sativum]
		RAFL05-02-J02	At1g08490 / nitrogen fixation protein. putative (NifS)		RAFL05-02-J02 ,At1g08490 cysteine desulfurase, putative similar to nitrogen fixation protein (nifS) GB:D64004 GI:1001701 from [Synechocystis sp]; contains TIGRFAM TIGR01364: phosphoserine aminotransferase; contains Pfam PF00266: aminotransferase, class V
3_19980001_20010000					A	B	C	D	P	P'	N
	Cluster:7-0				2	245	2	4414	0.015618202	0.046854608	3
		RAFL03-05-E08	At3g53990 / expressed protein		At3g53990 ,RAFL03-05-E08 universal stress protein (USP) family protein contains Pfam PF00582: universal stress protein family
		RAFL02-10-G21	At3g53990 / expressed protein		At3g53990 ,RAFL02-10-G21 universal stress protein (USP) family protein contains Pfam PF00582: universal stress protein family
5_15990001_16020000					A	B	C	D	P	P'	N
	Cluster:6-1				2	313	0	4348	0.004549907	0.004549907	1
		RAFL06-16-H05	At5g40730 / arabinogalactan-protein (AGP24)		RAFL06-16-H05 ,At5g40730 arabinogalactan-protein (AGP24)
		RAFL05-07-C04	At5g40740 / expressed protein		RAFL05-07-C04 ,At5g40740 expressed protein
1_3390001_3420000					A	B	C	D	P	P'	N
	Cluster:3-2				1	36	1	4625	0.015808338	0.031616677	2
		RAFL04-12-M19	At1g10360 / glutathione transferase, putative		RAFL04-12-M19 ,At1g10360 glutathione S-transferase, putative similar to glutathione S-transferase (sp|Q03666|GTX4_TOBAC); similar to EST gb|H36275 gb:AB039930.
3_4860001_4890000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	0	4554	0.02337551	0.02337551	1
		RAFL08-09-C10	At3g14560 / expressed protein		At3g14560 ,RAFL08-09-C10 expressed protein
1_27510001_27540000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL05-13-F01	At1g74100 / sulfotransferase family		RAFL05-13-F01 ,At1g74100 sulfotransferase family protein similar to SP|P52837 Flavonol 4'-sulfotransferase (EC 2.8.2.-) (F4-ST) {Flaveria chloraefolia}; contains Pfam profile PF00685: Sulfotransferase domain
3_3900001_4200000					A	B	C	D	P	P'	N
	Cluster:0-1				4	102	15	4542	7.516408E-4	0.0075164083	10
		RAFL07-16-P05	At3g12780 / phosphoglycerate kinase -related		RAFL07-16-P05 ,At3g12780 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
		RAFL09-15-L04	At3g12780 / phosphoglycerate kinase -related		RAFL09-15-L04 ,At3g12780 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
		RAFL07-14-L16	At3g12780 / phosphoglycerate kinase -related		At3g12780 ,RAFL07-14-L16 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
		RAFL09-18-L22	At3g12780 / phosphoglycerate kinase -related		At3g12780 ,RAFL09-18-L22 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase
	Cluster:8-1				3	159	16	4485	0.026495453	0.26495454	10
		RAFL09-16-C16	At3g12570 / expressed protein		At3g12570 ,RAFL09-16-C16 expressed protein
		RAFL07-09-M01	At3g12740 / membrane protein common family		RAFL07-09-M01 ,At3g12740 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein Similar to GI:4585976; GI:4966357; GI:4835763; GI:9757735 from [Arabidopsis thaliana]
		RAFL06-16-B16	At3g12740 / membrane protein common family		RAFL06-16-B16 ,At3g12740 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein Similar to GI:4585976; GI:4966357; GI:4835763; GI:9757735 from [Arabidopsis thaliana]
4_1020001_1050000					A	B	C	D	P	P'	N
	Cluster:10-1				2	41	1	4619	2.4776903E-4	4.9553806E-4	2
		RAFL03-07-M07	At4g02380 / late embryogenesis abundant protein family		RAFL03-07-M07 ,At4g02380 late embryogenesis abundant 3 family protein / LEA3 family protein similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein
		RAFL06-13-N20	At4g02380 / late embryogenesis abundant protein family		RAFL06-13-N20 ,At4g02380 late embryogenesis abundant 3 family protein / LEA3 family protein similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein
5_16080001_16110000					A	B	C	D	P	P'	N
	Cluster:1-1				2	103	2	4556	0.0029258758	0.008777628	3
		RAFL05-17-L14	At5g40850 / urophorphyrin III methylase (gb|AAB92676.1)		At5g40850 ,RAFL05-17-L14 urophorphyrin III methylase (UPM1) identical to urophorphyrin III methylase (GI:1146165) [Arabidopsis thaliana]; similar to s-adenosyl-L-methionine-dependent uroporphyrinogen III methyltransferase (GI:1490606) [Arabidopsis thaliana]; similar to Diphthine synthase (Diphtamide biosynthesis methyltransferase) (DPH5) (SP:P32469) [Saccharomyces cerevisiae]; contains Pfam PF00590 : Tetrapyrrole (Corrin/Porphyrin) Methylases domain; contains TIGRFAM PF00590: Tetrapyrrole (Corrin/Porphyrin) Methylases
		RAFL11-03-K10	At5g40850 / urophorphyrin III methylase (gb|AAB92676.1)		At5g40850 ,RAFL11-03-K10 urophorphyrin III methylase (UPM1) identical to urophorphyrin III methylase (GI:1146165) [Arabidopsis thaliana]; similar to s-adenosyl-L-methionine-dependent uroporphyrinogen III methyltransferase (GI:1490606) [Arabidopsis thaliana]; similar to Diphthine synthase (Diphtamide biosynthesis methyltransferase) (DPH5) (SP:P32469) [Saccharomyces cerevisiae]; contains Pfam PF00590 : Tetrapyrrole (Corrin/Porphyrin) Methylases domain; contains TIGRFAM PF00590: Tetrapyrrole (Corrin/Porphyrin) Methylases
1_25920001_25950000					A	B	C	D	P	P'	N
	Cluster:7-2				1	63	1	4598	0.027264666	0.05452933	2
		RAFL06-15-N08	At1g69840 / expressed protein		At1g69840 ,RAFL06-15-N08 band 7 family protein strong similarity to hypersensitive-induced response protein [Zea mays] GI:7716466; contains Pfam profile PF01145: SPFH domain / Band 7 family
2_9300001_9330000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	1	4585	0.032756753	0.06551351	2
		RAFL11-05-A04	At2g21970 / stress enhanced protein 2 (SEP2); nuclear gene for chloroplast product		At2g21970 ,RAFL11-05-A04 stress enhanced protein 2 (SEP2) nearly identical to stress enhanced protein 2; SEP2 (GI:7384980) [Arabidopsis thaliana]
3_5880001_5910000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL11-02-I18	At3g17210 / expressed protein		At3g17210 ,RAFL11-02-I18 stable protein 1-related similar to stable protein 1 (GI:13445204) [Populus tremula] PMID:12376651; similar to pop3 peptide GB:AAC26526 from [Populus balsamifera subsp. trichocarpa X Populus deltoides]
2_7470001_7500000					A	B	C	D	P	P'	N
	Cluster:3-0				2	231	1	4429	0.007213332	0.014426664	2
		RAFL05-07-F05	At2g17360 / 40S ribosomal protein S4 (RPS4A)		At2g17360 ,RAFL05-07-F05 40S ribosomal protein S4 (RPS4A) contains ribosomal protein S4 signature from residues 8 to 22
		RAFL09-18-O15	At2g17360 / 40S ribosomal protein S4 (RPS4A)		RAFL09-18-O15 ,At2g17360 40S ribosomal protein S4 (RPS4A) contains ribosomal protein S4 signature from residues 8 to 22
	Cluster:5-0				1	76	2	4584	0.04873567	0.09747134	2
		RAFL08-14-M16	At2g17340 / expressed protein		RAFL08-14-M16 ,At2g17340 pantothenate kinase-related contains Pfam domain, PF01937: Protein of unknown function; supported by tandem duplication of pantothenate kinase -related protein (TIGR_Ath1:At2g17320) [Arabidopsis thaliana]
1_21000001_24000000					A	B	C	D	P	P'	N
	Cluster:2-0				10	140	77	4436	4.19244E-4	0.010900344	26
		RAFL07-12-D05	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		At1g62380 ,RAFL07-12-D05 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL07-11-E17	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		At1g62380 ,RAFL07-11-E17 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL09-06-C02	At1g61520 / light-harvesting chlorophyll a/b binding protein		RAFL09-06-C02 ,At1g61520 chlorophyll A-B binding protein / LHCI type III (LHCA3.1) nearly identical to PSI type III chlorophyll a/b-binding protein GI:430947; contains Pfam profile: PF00504 chlorophyll A-B binding protein; similar to PSI type III chlorophyll a/b-binding protein GI:430947 from [Arabidopsis thaliana]
		RAFL07-15-M15	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		RAFL07-15-M15 ,At1g62380 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL07-17-B02	At1g59359 / 40S ribosomal protein S2 (RPS2B)		RAFL07-17-B02 ,At1g59359 40S ribosomal protein S2 (RPS2B) similar to ribosomal protein S2 GI:430711 from [Drosophila melanogaster]
		RAFL08-12-L17	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		At1g62380 ,RAFL08-12-L17 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL06-07-N12	At1g63690 / expressed protein		At1g63690 ,RAFL06-07-N12 protease-associated (PA) domain-containing protein contains protease associated (PA) domain, Pfam:PF02225
		RAFL09-06-L01	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		RAFL09-06-L01 ,At1g62380 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
		RAFL08-13-D15	At1g65295 / expressed protein		RAFL08-13-D15 ,At1g65295 expressed protein
		RAFL11-07-L13	At1g62380 / 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase), putative		RAFL11-07-L13 ,At1g62380 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
	Cluster:9-1				7	89	80	4487	0.0019192069	0.04989938	26
		RAFL09-10-F18	At1g58360 / amino acid permease I (AAP1)		RAFL09-10-F18 ,At1g58360 amino acid permease I (AAP1) identical to amino acid permease I GI:22641 from [Arabidopsis thaliana]
		RAFL08-08-O14	At1g64110 / expressed protein		RAFL08-08-O14 ,At1g64110 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family
		RAFL05-18-H15	At1g64660 / methionine/cystathionine gamma lyase -related		At1g64660 ,RAFL05-18-H15 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme family protein similar to SP|P13254 Methionine gamma-lyase (EC 4.4.1.11) (L-methioninase) {Pseudomonas putida}; contains Pfam profile PF01053: Cys/Met metabolism PLP-dependent enzyme
		RAFL04-19-J05	At1g61800 / glucose-6-phosphate/phosphate-translocator, putative		At1g61800 ,RAFL04-19-J05 glucose-6-phosphate/phosphate translocator, putative similar to glucose-6-phosphate/phosphate-translocator precursor GI:2997591 from [Pisum sativum]
		RAFL11-02-N11	At1g64660 / methionine/cystathionine gamma lyase -related		At1g64660 ,RAFL11-02-N11 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme family protein similar to SP|P13254 Methionine gamma-lyase (EC 4.4.1.11) (L-methioninase) {Pseudomonas putida}; contains Pfam profile PF01053: Cys/Met metabolism PLP-dependent enzyme
		RAFL05-08-D17	At1g63720 / expressed protein		RAFL05-08-D17 ,At1g63720 expressed protein similar to putative protein GB:CAA18164 [Arabidopsis thaliana]
		RAFL09-10-F14	At1g63010 / expressed protein		At1g63010 ,RAFL09-10-F14 SPX (SYG1/Pho81/XPR1) domain-containing protein contains Pfam profile PF03105: SPX domain
1_1530001_1560000					A	B	C	D	P	P'	N
	Cluster:10-0				1	23	1	4638	0.01026841	0.02053682	2
		RAFL06-10-C16	At1g05340 / expressed protein		RAFL06-10-C16 ,At1g05340 expressed protein
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL09-15-I16	At1g05340 / expressed protein		RAFL09-15-I16 ,At1g05340 expressed protein
1_7890001_7920000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	0	4567	0.020587604	0.020587604	1
		RAFL05-02-P11	At1g22370 / glycosyltransferase family		At1g22370 ,RAFL05-02-P11 UDP-glucoronosyl/UDP-glucosyl transferase family protein glycosyltransferase family
4_6300001_6600000					A	B	C	D	P	P'	N
	Cluster:0-2				2	77	4	4580	0.0040679234	0.020339618	5
		RAFL06-07-K01	At4g12800 / probable photosystem I chain XI precursor		At4g12800 ,RAFL06-07-K01 photosystem I reaction center subunit XI, chloroplast (PSI-L) / PSI subunit V identical to Photosystem I reaction center subunit XI, chloroplast precursor (PSI-L) (PSI subunit V) (Swiss-Prot:Q9SUI4) [Arabidopsis thaliana]; contains Pfam profile PF02605: photosystem I reaction center subunit XI; contains 2 transmembrane domains
		RAFL06-16-J22	At4g12800 / probable photosystem I chain XI precursor		At4g12800 ,RAFL06-16-J22 photosystem I reaction center subunit XI, chloroplast (PSI-L) / PSI subunit V identical to Photosystem I reaction center subunit XI, chloroplast precursor (PSI-L) (PSI subunit V) (Swiss-Prot:Q9SUI4) [Arabidopsis thaliana]; contains Pfam profile PF02605: photosystem I reaction center subunit XI; contains 2 transmembrane domains
4_16650001_16680000					A	B	C	D	P	P'	N
	Cluster:3-1				1	215	0	4447	0.04632211	0.04632211	1
		RAFL05-15-N03	At4g37660 / ribosomal - like protein		RAFL05-15-N03 ,At4g37660 ribosomal protein L12 family protein ribosomal protein L12, Liberobacter africanum, U09675
2_16320001_16350000					A	B	C	D	P	P'	N
	Cluster:5-2				1	125	0	4537	0.027021231	0.027021231	1
		RAFL07-13-I05	At2g39220 / patatin family		At2g39220 ,RAFL07-13-I05 patatin family protein similar to patatin-like latex allergen [Hevea brasiliensis][PMID:10589016]; contains patatin domain PF01734
4_7200001_7500000					A	B	C	D	P	P'	N
	Cluster:2-1				3	241	7	4412	0.012910854	0.09037598	7
		RAFL06-10-J18	At4g14320 / 60S ribosomal protein L36a/L44 (RPL36aB)		RAFL06-10-J18 ,At4g14320 60S ribosomal protein L36a/L44 (RPL36aB)
		RAFL07-16-L09	At4g14420 / elicitor like protein		At4g14420 ,RAFL07-16-L09 lesion inducing protein-related similar to ORF, able to induce HR-like lesions [Nicotiana tabacum] gi|1762945|gb|AAC49975
		RAFL05-21-A10	At4g14870 / expressed protein		At4g14870 ,RAFL05-21-A10 expressed protein
	Cluster:1-1				2	103	8	4550	0.02008839	0.14061873	7
		RAFL06-14-F04	At4g14890 / ferredoxin family		RAFL06-14-F04 ,At4g14890 ferredoxin family protein similar to SP|P00252 Ferredoxin I from Nostoc muscorum, SP|P00248 Ferredoxin from Mastigocladus laminosus, SP|P00244 Ferredoxin I from Aphanizomenon flos-aquae; contains Pfam profile PF00111 2Fe-2S iron-sulfur cluster binding domain
		RAFL07-08-F02	At4g14360 / dehydration-induced protein-related		At4g14360 ,RAFL07-08-F02 dehydration-responsive protein-related similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase
3_570001_600000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	2	4599	0.0393688	0.1181064	3
		RAFL07-13-P15	At3g02750 / protein phosphatase 2C (PP2C)		RAFL07-13-P15 ,At3g02750 protein phosphatase 2C family protein / PP2C family protein similar to protein phosphatase-2C; PP2C (GI:3643088) [Mesembryanthemum crystallinum]; contains Pfam PF00481 : Protein phosphatase 2C domain;
1_3510001_3540000					A	B	C	D	P	P'	N
	Cluster:5-0				1	76	2	4584	0.04873567	0.146207	3
		RAFL07-07-M15	At1g10670 / ATP citrate-lyase -related		At1g10670 ,RAFL07-07-M15 expressed protein
2_16140001_16170000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	1	4609	0.022605369	0.045210738	2
		RAFL04-20-B02	At2g38750 / annexin -related		At2g38750 ,RAFL04-20-B02 annexin 4 (ANN4) nearly identical to annexin (AnnAt4) [Arabidopsis thaliana] GI:6503084; contains Pfam profile PF00191: Annexin
1_30030001_30060000					A	B	C	D	P	P'	N
	Cluster:9-2				1	66	2	4594	0.042497892	0.12749368	3
		RAFL05-18-H12	At1g80840 / WRKY family transcription factor		RAFL05-18-H12 ,At1g80840 WRKY family transcription factor similar to WRKY transcription factor GB:BAA87058 GI:6472585 from [Nicotiana tabacum]
1_21900001_22200000					A	B	C	D	P	P'	N
	Cluster:0-2				2	77	2	4582	0.0016634972	0.0049904916	3
		RAFL11-11-P13	At1g60950 / ferrodoxin, chloroplast		RAFL11-11-P13 ,At1g60950 ferredoxin, chloroplast (PETF) identical to FERREDOXIN PRECURSOR GB:P16972 [SP|P16972] from [Arabidopsis thaliana]
		RAFL05-18-N22	At1g60950 / ferrodoxin, chloroplast		RAFL05-18-N22 ,At1g60950 ferredoxin, chloroplast (PETF) identical to FERREDOXIN PRECURSOR GB:P16972 [SP|P16972] from [Arabidopsis thaliana]
5_24900001_25200000					A	B	C	D	P	P'	N
	Cluster:8-0				2	107	12	4542	0.041028306	0.49233967	12
		RAFL07-11-G07	At5g63190 / MA3 domain-containing protein		At5g63190 ,RAFL07-11-G07 MA3 domain-containing protein low similarity to programmed cell death 4 protein [Gallus gallus] GI:12958564; contains Pfam profile PF02847: MA3 domain
		RAFL04-10-G08	At5g63190 / MA3 domain-containing protein		At5g63190 ,RAFL04-10-G08 MA3 domain-containing protein low similarity to programmed cell death 4 protein [Gallus gallus] GI:12958564; contains Pfam profile PF02847: MA3 domain
1_23760001_23790000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	0	4554	0.02337551	0.02337551	1
		RAFL09-16-D24	At1g64950 / cytochrome P450, putative		At1g64950 ,RAFL09-16-D24 cytochrome P450, putative similar to cytochrome P450 89A2 (CYPLXXXIX) (SP:Q42602) [Arabidopsis thaliana];similar to cytochrome P450 (GI:438242) [Solanum melongena]
1_9900001_10200000					A	B	C	D	P	P'	N
	Cluster:7-2				2	62	8	4591	0.0077741425	0.06219314	8
		RAFL07-09-K08	At1g28380 / expressed protein		At1g28380 ,RAFL07-09-K08 expressed protein
		RAFL09-18-C18	At1g28370 / ethylene responsive element binding factor 11, putative (EREBP11)(ERF11)		RAFL09-18-C18 ,At1g28370 ERF domain protein 11 (ERF11) identical to ERF domain protein 11 (AtERF11) GI:15207789 from [Arabidopsis thaliana]
3_10020001_10050000					A	B	C	D	P	P'	N
	Cluster:8-1				1	161	0	4501	0.034741584	0.034741584	1
		RAFL08-09-G20	At3g27210 / expressed protein		RAFL08-09-G20 ,At3g27210 expressed protein
2_12300001_12330000					A	B	C	D	P	P'	N
	Cluster:8-0				1	108	1	4553	0.0462095	0.092419	2
		RAFL04-17-D16	At2g28840 / RING zinc finger ankyrin protein -related		At2g28840 ,RAFL04-17-D16 ankyrin repeat family protein contains ankyrin repeats, Pfam:PF00023
4_1_3000000					A	B	C	D	P	P'	N
	Cluster:8-1				9	153	72	4429	0.0018003528	0.04320847	24
		RAFL04-16-G03	At4g02890 / polyubiquitin (UBQ14)		RAFL04-16-G03 ,At4g02890 polyubiquitin (UBQ14) identical to GI:166795; similar to N. sylvestris hexameric polyubiquitin, GenBank accession number M74101
		RAFL05-18-E11	At4g03430 / pre-mRNA splicing factor -related		RAFL05-18-E11 ,At4g03430 pre-mRNA splicing factor-related similar to pre-mRNA splicing factor pre-mRNA splicing factor prp1 (SP:Q12381) [Fission yeast]
		RAFL09-09-O15	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL09-09-O15 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL09-06-I17	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL09-06-I17 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL04-17-I16	At4g02380 / late embryogenesis abundant protein family		RAFL04-17-I16 ,At4g02380 late embryogenesis abundant 3 family protein / LEA3 family protein similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein
		RAFL05-14-O22	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL05-14-O22 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL07-10-D10	At4g05320 / polyubiquitin UBQ10/SEN3		At4g05320 ,RAFL07-10-D10 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791
		RAFL05-16-P22	At4g05150 / octicosapeptide/Phox/Bem1p (PB1) domain-containing protein		At4g05150 ,RAFL05-16-P22 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein various predicted proteins contains Pfam profile PF00564: PB1 domain
		RAFL08-16-I23	At4g01120 / G-box binding factor(bZIP protein), putative		RAFL08-16-I23 ,At4g01120 G-box binding factor 2 (GBF2) identical to G-box binding factor 2 (GBF2) SP:P42775 from [Arabidopsis thaliana];contains Pfam profile: PF00170 bZIP transcription factor
	Cluster:10-1				4	39	77	4543	0.006235307	0.14964737	24
		RAFL05-12-H13	At4g01020 / helicase domain-containing protein		At4g01020 ,RAFL05-12-H13 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain, PF00097: Zinc finger, C3HC4 type (RING finger), PF01485: IBR domain
		RAFL05-14-D24	At4g05100 / myb DNA-binding protein		At4g05100 ,RAFL05-14-D24 myb family transcription factor (MYB74) contains Pfam profile: PF00249 myb-like DNA-binding domain; identical to cDNA putative transcription factor (MYB74) mRNA, partial cds GI:3941505
		RAFL03-07-M07	At4g02380 / late embryogenesis abundant protein family		RAFL03-07-M07 ,At4g02380 late embryogenesis abundant 3 family protein / LEA3 family protein similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein
		RAFL06-13-N20	At4g02380 / late embryogenesis abundant protein family		RAFL06-13-N20 ,At4g02380 late embryogenesis abundant 3 family protein / LEA3 family protein similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein
	Cluster:1-0				7	142	74	4440	0.014235923	0.34166214	24
		RAFL05-01-O08	At4g01150 / expressed protein		RAFL05-01-O08 ,At4g01150 expressed protein
		RAFL05-02-L04	At4g02530 / chloroplast thylakoid lumen protein		RAFL05-02-L04 ,At4g02530 chloroplast thylakoid lumen protein SP:022773 ;TL16_ARATH
		RAFL05-08-K07	At4g01310 / ribosomal protein L5p family		RAFL05-08-K07 ,At4g01310 ribosomal protein L5 family protein contains Pfam profiles PF00673: ribosomal L5P family C-terminus, PF00281: ribosomal protein L5
		RAFL07-17-I11	At4g02290 / glycosyl hydrolase family 9		RAFL07-17-I11 ,At4g02290 glycosyl hydrolase family 9 protein similar to endo-1,4-beta glucanase; ATCEL2 GI:3132891 from [Arabidopsis thaliana]
		RAFL06-16-A22	At4g05180 / oxygen-evolving complex protein 16, chloroplast precursor (OEC16)		RAFL06-16-A22 ,At4g05180 oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ2) identical to SP|Q41932 Oxygen-evolving enhancer protein 3-2, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Arabidopsis thaliana}; similar to SP|P12301 Oxygen-evolving enhancer protein 3, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Spinacia oleracea}; contains Pfam profile PF05757: Oxygen evolving enhancer protein 3 (PsbQ)
		RAFL07-07-D15	At4g04940 / transducin / WD-40 repeat protein family		At4g04940 ,RAFL07-07-D15 transducin family protein / WD-40 repeat family protein contains seven G-protein beta WD-40 repeats
		RAFL09-14-J06	At4g04460 / aspartic protease -related		RAFL09-14-J06 ,At4g04460 aspartyl protease family protein contains Pfam profiles: PF00026 eukaryotic aspartyl protease, PF03489 surfactant protein B, PF05184 saposin-like type B, region 1
	Cluster:8-2				4	58	77	4524	0.022002848	0.52806836	24
		RAFL04-14-B14	At4g05050 / polyubiquitin UBQ11		At4g05050 ,RAFL04-14-B14 polyubiquitin (UBQ11) identical to GI:304117
		RAFL06-07-F24	At4g05050 / polyubiquitin UBQ11		RAFL06-07-F24 ,At4g05050 polyubiquitin (UBQ11) identical to GI:304117
		RAFL06-09-F19	At4g00430 / transmembrane protein (MIP family)		At4g00430 ,RAFL06-09-F19 plasma membrane intrinsic protein, putative identical to transmembrane protein GI:535780 from [Arabidopsis thaliana]; very strong similarity to SP|Q08733 Plasma membrane intrinsic protein 1C (Transmembrane protein B) (TMP-B) {Arabidopsis thaliana}; contains Pfam profile PF00230: Major intrinsic protein;
		RAFL05-16-H03	At4g00360 / cytochrome p450, putative		At4g00360 ,RAFL05-16-H03 cytochrome P450, putative
3_210001_240000					A	B	C	D	P	P'	N
	Cluster:7-0				3	244	2	4414	0.0013562166	0.00406865	3
		RAFL08-18-G23	At3g01540 / DEAD box RNA helicase (DRH1)		At3g01540 ,RAFL08-18-G23 DEAD box RNA helicase (DRH1) identical to RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain
		RAFL07-16-I19	At3g01540 / DEAD box RNA helicase (DRH1)		At3g01540 ,RAFL07-16-I19 DEAD box RNA helicase (DRH1) identical to RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain
		RAFL05-12-D03	At3g01540 / DEAD box RNA helicase (DRH1)		RAFL05-12-D03 ,At3g01540 DEAD box RNA helicase (DRH1) identical to RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain
5_210001_240000					A	B	C	D	P	P'	N
	Cluster:9-1				1	95	1	4566	0.040755685	0.08151137	2
		RAFL06-11-F15	At5g01600 / ferritin 1 precursor		RAFL06-11-F15 ,At5g01600 ferritin 1 (FER1) identical to ferritin [Arabidopsis thaliana] GI:1246401, GI:8163920
3_18240001_18270000					A	B	C	D	P	P'	N
	Cluster:8-2				1	61	2	4599	0.0393688	0.1181064	3
		RAFL07-12-F11	At3g49220 / pectinesterase family		At3g49220 ,RAFL07-12-F11 pectinesterase family protein contains Pfam profile: PF01095 pectinesterase
4_12930001_12960000					A	B	C	D	P	P'	N
	Cluster:10-1				1	42	1	4619	0.018359985	0.03671997	2
		RAFL05-16-H23	At4g28140 / AP2 domain transcription factor, putative		RAFL05-16-H23 ,At4g28140 AP2 domain-containing transcription factor, putative similar to AP2 domain containing protein RAP2.4 - Arabidopsis thaliana, PID:g2281633
1_7560001_7590000					A	B	C	D	P	P'	N
	Cluster:3-0				1	232	0	4430	0.049967833	0.049967833	1
		RAFL05-10-H23	At1g21640 / expressed protein		At1g21640 ,RAFL05-10-H23 ATP-NAD kinase family protein contains similarity to NAD kinase [Homo sapiens] gi|20070086|gb|AAM01195; contains Pfam domain, PF01513: ATP-NAD kinase
5_6060001_6090000					A	B	C	D	P	P'	N
	Cluster:4-2				1	134	0	4528	0.028951319	0.028951319	1
		RAFL05-08-B08	At5g18380 / 40S ribosomal protein S16 (RPS16C)		At5g18380 ,RAFL05-08-B08 40S ribosomal protein S16 (RPS16C)
4_14550001_14580000					A	B	C	D	P	P'	N
	Cluster:1-1				1	104	0	4558	0.022517692	0.022517692	1
		RAFL04-12-O23	At4g32330 / expressed protein		RAFL04-12-O23 ,At4g32330 expressed protein
5_19560001_19590000					A	B	C	D	P	P'	N
	Cluster:1-2				1	173	0	4489	0.037315033	0.037315033	1
		RAFL07-08-E09	At5g49030 / isoleucyl-tRNA synthetase		RAFL07-08-E09 ,At5g49030 tRNA synthetase class I (I, L, M and V) family protein similar to SP|P41972 Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase) (IleRS) {Staphylococcus aureus}; contains Pfam profile PF00133: tRNA synthetases class I (I, L, M and V)
4_10590001_10620000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL04-16-O12	At4g21960 / peroxidase, putative		RAFL04-16-O12 ,At4g21960 peroxidase 42 (PER42) (P42) (PRXR1) identical to SP|Q9SB81 Peroxidase 42 precursor (EC 1.11.1.7) (Atperox P42) (PRXR1) (ATP1a/ATP1b) {Arabidopsis thaliana}
1_29670001_29700000					A	B	C	D	P	P'	N
	Cluster:1-0				2	147	1	4513	0.0029792225	0.005958445	2
		RAFL06-16-K01	At1g79850 / chloroplast 30S ribosomal protein S17 (CS17)		RAFL06-16-K01 ,At1g79850 30S ribosomal protein S17, chloroplast / CS17 (RPS17) identical to 30S ribosomal protein S17, chloroplast precursor GB:P16180 [Arabidopsis thaliana]
		RAFL04-19-L23	At1g79850 / chloroplast 30S ribosomal protein S17 (CS17)		RAFL04-19-L23 ,At1g79850 30S ribosomal protein S17, chloroplast / CS17 (RPS17) identical to 30S ribosomal protein S17, chloroplast precursor GB:P16180 [Arabidopsis thaliana]
1_29280001_29310000					A	B	C	D	P	P'	N
	Cluster:6-0				2	138	4	4519	0.012401914	0.062009573	5
		RAFL09-18-I11	At1g78820 / curculin-like (mannose-binding) lectin family		At1g78820 ,RAFL09-18-I11 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein similar to S locus glycoprotein [Brassica rapa] GI:12246840; contains Pfam profile PF01453: Lectin (probable mannose binding)
		RAFL09-06-A15	At1g78820 / curculin-like (mannose-binding) lectin family		RAFL09-06-A15 ,At1g78820 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein similar to S locus glycoprotein [Brassica rapa] GI:12246840; contains Pfam profile PF01453: Lectin (probable mannose binding)
1_19680001_19710000					A	B	C	D	P	P'	N
	Cluster:2-2				1	52	0	4610	0.011366073	0.011366073	1
		RAFL06-10-O06	At1g53840 / pectinesterase family		At1g53840 ,RAFL06-10-O06 pectinesterase family protein contains Pfam profile: PF01095 pectinesterase
2_9990001_10020000					A	B	C	D	P	P'	N
	Cluster:1-0				1	148	0	4514	0.031953678	0.031953678	1
		RAFL09-12-L06	At2g23600 / hydrolase, alpha/beta fold family		At2g23600 ,RAFL09-12-L06 hydrolase, alpha/beta fold family protein similar to ethylene-induced esterase [Citrus sinensis] GI:14279437, polyneuridine aldehyde esterase [Rauvolfia serpentina] GI:6651393; contains Pfam profile PF00561: hydrolase, alpha/beta fold family
Chromosome:1					A	B	C	D	P	P'	N
	Cluster:0-2				32	47	1087	3497	0.0012182354	0.040201765	33
		RAFL05-16-F08	At1g31330 / photosystem I subunit III precursor -related		RAFL05-16-F08 ,At1g31330 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL08-12-J08	At1g14345 / expressed protein		At1g14345 ,RAFL08-12-J08 expressed protein contains one transmembrane domain
		RAFL04-17-G02	At1g56340 / calreticulin 1 (CRT1)		At1g56340 ,RAFL04-17-G02 calreticulin 1 (CRT1) identical to calreticulin (crt1) GI:2052379 [Arabidopsis thaliana]
		RAFL06-12-L07	At1g08380 / expressed protein		At1g08380 ,RAFL06-12-L07 expressed protein
		RAFL06-09-H06	At1g29910 / photosystem II type I chlorophyll a /b binding protein, putative		RAFL06-09-H06 ,At1g29910 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2A) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL07-10-D01	At1g74470 / geranylgeranyl reductase		At1g74470 ,RAFL07-10-D01 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
		RAFL11-11-P13	At1g60950 / ferrodoxin, chloroplast		RAFL11-11-P13 ,At1g60950 ferredoxin, chloroplast (PETF) identical to FERREDOXIN PRECURSOR GB:P16972 [SP|P16972] from [Arabidopsis thaliana]
		RAFL05-18-N22	At1g60950 / ferrodoxin, chloroplast		RAFL05-18-N22 ,At1g60950 ferredoxin, chloroplast (PETF) identical to FERREDOXIN PRECURSOR GB:P16972 [SP|P16972] from [Arabidopsis thaliana]
		RAFL04-19-A20	At1g12110 / putative NPK1-related protein kinase 2		At1g12110 ,RAFL04-19-A20 nitrate/chlorate transporter (NRT1.1) (CHL1) identical to nitrate/chlorate transporter SP:Q05085 from [Arabidopsis thaliana]; contains Pfam profile: PF00854 POT family
		RAFL06-12-C05	At1g08380 / expressed protein		RAFL06-12-C05 ,At1g08380 expressed protein
		RAFL04-10-O12	At1g12250 / chloroplast lumen pentapeptide protein, putative		RAFL04-10-O12 ,At1g12250 thylakoid lumenal protein-related weak similarity to SP|O22160 Thylakoid lumenal 15 kDa protein, chloroplast precursor (p15) {Arabidopsis thaliana}; contains Pfam profile PF00805: Pentapeptide repeats (8 copies)
		RAFL09-06-G16	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL09-06-G16 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL08-15-B05	At1g08380 / expressed protein		RAFL08-15-B05 ,At1g08380 expressed protein
		RAFL06-15-G08	At1g52220 / expressed protein		At1g52220 ,RAFL06-15-G08 expressed protein
		RAFL04-19-G19	At1g74730 / expressed protein		At1g74730 ,RAFL04-19-G19 expressed protein
		RAFL06-16-F14	At1g29920 / photosystem II type I chlorophyll a /b binding protein, putative		At1g29920 ,RAFL06-16-F14 chlorophyll A-B binding protein 165/180, chloroplast / LHCII type I CAB-165/180 identical to SP|P04777 Chlorophyll A-B binding protein 165/180, chloroplast precursor (LHCII type I CAB-165/180) (LHCP) {Arabidopsis thaliana}; similar to photosystem II type I chlorophyll a /b binding protein GI:16364 from [Arabidopsis thaliana]
		RAFL05-17-G01	At1g51400 / photosystem II 5 KD protein		At1g51400 ,RAFL05-17-G01 photosystem II 5 kD protein 100% identical to GI:4836947 (F5D21.10)
		RAFL09-10-I02	At1g29930 / light-harvesting chlorophyll a/b binding protein		RAFL09-10-I02 ,At1g29930 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL07-15-H08	At1g74470 / geranylgeranyl reductase		RAFL07-15-H08 ,At1g74470 geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)
		RAFL06-08-A02	At1g29920 / photosystem II type I chlorophyll a /b binding protein, putative		At1g29920 ,RAFL06-08-A02 chlorophyll A-B binding protein 165/180, chloroplast / LHCII type I CAB-165/180 identical to SP|P04777 Chlorophyll A-B binding protein 165/180, chloroplast precursor (LHCII type I CAB-165/180) (LHCP) {Arabidopsis thaliana}; similar to photosystem II type I chlorophyll a /b binding protein GI:16364 from [Arabidopsis thaliana]
		RAFL04-09-M24	At1g54500 / rubredoxin -related		At1g54500 ,RAFL04-09-M24 rubredoxin family protein similar to SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas}; contains Pfam profile PF00301: Rubredoxin
		RAFL05-19-G04	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL05-19-G04 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL02-02-L10	At1g03130 / photosystem I reaction center subunit II precursor -related		RAFL02-02-L10 ,At1g03130 photosystem I reaction center subunit II, chloroplast, putative / photosystem I 20 kDa subunit, putative / PSI-D, putative (PSAD2) similar to SP|P12353 Photosystem I reaction center subunit II, chloroplast precursor (Photosystem I 20 kDa subunit) (PSI-D) {Spinacia oleracea}; contains Pfam profile PF02531: PsaD
		RAFL06-15-B12	At1g29930 / light-harvesting chlorophyll a/b binding protein		At1g29930 ,RAFL06-15-B12 chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B) identical to SP|P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana}
		RAFL05-04-A19	At1g51400 / photosystem II 5 KD protein		At1g51400 ,RAFL05-04-A19 photosystem II 5 kD protein 100% identical to GI:4836947 (F5D21.10)
		RAFL06-12-P20	At1g28400 / expressed protein		RAFL06-12-P20 ,At1g28400 expressed protein similar to E6 (GI:1000090) [Gossypium barbadense]
		RAFL05-01-I05	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL05-01-I05 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL08-09-H12	At1g75460 / protease -related		At1g75460 ,RAFL08-09-H12 ATP-dependent protease La (LON) domain-containing protein weak similarity to SP|P36774 ATP-dependent protease La 2 (EC 3.4.21.53) {Myxococcus xanthus}; contains Pfam profile PF02190: ATP-dependent protease La (LON) domain
		RAFL09-16-K15	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL09-16-K15 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL05-09-F03	At1g31330 / photosystem I subunit III precursor -related		At1g31330 ,RAFL05-09-F03 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III
		RAFL07-14-F21	At1g54780 / thylakoid lumen 18.3 kDa protein		RAFL07-14-F21 ,At1g54780 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
		RAFL11-03-K23	At1g54500 / rubredoxin -related		At1g54500 ,RAFL11-03-K23 rubredoxin family protein similar to SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas}; contains Pfam profile PF00301: Rubredoxin
	Cluster:7-1				84	181	1035	3363	0.0037613933	0.12412597	33
		RAFL11-06-E04	At1g76920 / F-box protein family (FBX3)		At1g76920 ,RAFL11-06-E04 F-box family protein (FBX3) contains similarity to stamina pistilloidia GI:4101570, the pea ortholog of Fim and UFO from [Pisum sativum]
		RAFL08-12-P05	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		RAFL08-12-P05 ,At1g22710 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
		RAFL05-15-K12	At1g54270 / eukaryotic translation initiation factor 4A-2 (eIF4A-2)		RAFL05-15-K12 ,At1g54270 eukaryotic translation initiation factor 4A-2 / eIF-4A-2 similar to eukaryotic translation initiation factor 4A GI:19696 from [Nicotiana plumbaginifolia]
		RAFL02-07-N19	At1g10760 / SEX1 protein; nuclear gene for chloroplast product		At1g10760 ,RAFL02-07-N19 starch excess protein (SEX1) identical to SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA gi|12044357|gb|AF312027.1|AF312027
		RAFL08-10-B15	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		RAFL08-10-B15 ,At1g22710 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
		RAFL08-12-E01	At1g01550 / expressed protein		At1g01550 ,RAFL08-12-E01 expressed protein
		RAFL06-08-E17	At1g22840 / cytochrome C -related		RAFL06-08-E17 ,At1g22840 cytochrome c, putative similar to cytochrome c [Pumpkin, Winter squash] SWISS-PROT:P00051
		RAFL09-12-N02	At1g07630 / expressed protein		RAFL09-12-N02 ,At1g07630 protein phosphatase 2C family protein / PP2C family protein similar to protein phosphatase-2c (GI:3608412) [Mesembryanthemum crystallinum]; contains Pfam PF00481 : Protein phosphatase 2C domain
		RAFL11-05-C09	At1g78100 / F-box protein family		RAFL11-05-C09 ,At1g78100 F-box family protein contains F-box domain Pfam:PF00646
		RAFL09-16-J21	At1g72330 / alanine aminotransferase, putative		At1g72330 ,RAFL09-16-J21 alanine aminotransferase, putative similar to alanine aminotransferase 2 SP|P34106 from Panicum miliaceum, SP|P52894 from Hordeum vulgare, GI:4730884 from Oryza sativa
		RAFL05-16-O12	At1g27930 / expressed protein		RAFL05-16-O12 ,At1g27930 expressed protein contains Pfam profile PF04669: Protein of unknown function (DUF579)
		RAFL05-21-L05	At1g60170 / expressed protein		RAFL05-21-L05 ,At1g60170 pre-mRNA processing ribonucleoprotein binding region-containing protein similar to U4/U6 snRNP-associated 61 kDa protein [Homo sapiens] GI:18249847; contains Pfam profile PF01798: Putative snoRNA binding domain
		RAFL09-14-E14	At1g20560 / AMP-dependent synthetase and ligase family		RAFL09-14-E14 ,At1g20560 AMP-dependent synthetase and ligase family protein similar to AMP-binding protein GI:1903034 from [Brassica napus]; contains Pfam AMP-binding domain PF00501; identical to adenosine monophosphate binding protein 1 AMPBP1 (AMPBP1) GI:20799710
		RAFL08-11-M01	At1g67580 / protein kinase family		RAFL08-11-M01 ,At1g67580 protein kinase family protein contains protein kinase domain, Pfam:PF00069
		RAFL11-04-K22	At1g29050 / expressed protein		RAFL11-04-K22 ,At1g29050 expressed protein similar to hypothetical protein GB:AAB67625 GI:2342727 from [Arabidopsis thaliana]
		RAFL04-20-P06	At1g05170 / galactosyltransferase family		RAFL04-20-P06 ,At1g05170 galactosyltransferase family protein
		RAFL06-16-D20	At1g80210 / hypothetical protein		At1g80210 ,RAFL06-16-D20 expressed protein
		RAFL02-05-J03	At1g67730 / short chain dehydrogenase/reductase family protein (b-keto acyl reductase, putative)		RAFL02-05-J03 ,At1g67730 b-keto acyl reductase, putative (GLOSSY8) similar to b-keto acyl reductase GI:2586127 from [Hordeum vulgare]
		RAFL07-18-E24	At1g03400 / 2-oxoglutarate-dependent dioxygenase, putative		RAFL07-18-E24 ,At1g03400 2-oxoglutarate-dependent dioxygenase, putative similar to 2A6 (GI:599622) and tomato ethylene synthesis regulatory protein E8 (SP|P10967); similar to ESTs emb|Z34690, gb|T04168, gb|H37738, gb|T76913, gb|T43801, amd gb|T21964
		RAFL06-16-K07	At1g73720 / transducin / WD-40 repeat protein family		RAFL06-16-K07 ,At1g73720 transducin family protein / WD-40 repeat family protein contains 5 WD-40 repeats (PF00400); similar to Will die slowly protein (SP:Q9V3J8)[Drosophila melanogaster]
		RAFL05-19-L21	At1g60650 / glycine-rich RNA-binding protein, putative		At1g60650 ,RAFL05-19-L21 glycine-rich RNA-binding protein, putative similar to RNA binding protein(RZ-1) GI:1435061 from [Nicotiana sylvestris]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM)
		RAFL06-09-B20	At1g80400 / C3HC4-type zinc finger protein family		RAFL06-09-B20 ,At1g80400 zinc finger (C3HC4-type RING finger) family protein low similarity to SP|Q90972 RING finger protein 13 {Gallus gallus}; contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)
		RAFL07-08-A08	At1g06780 / glycosyltransferase family 8		At1g06780 ,RAFL07-08-A08 glycosyl transferase family 8 protein contains Pfam profile: PF01501 glycosyl transferase family 8
		RAFL09-17-E24	At1g04140 / transducin / WD-40 repeat protein family		RAFL09-17-E24 ,At1g04140 transducin family protein / WD-40 repeat family protein contains 4 WD-40 repeats (PF00400); similar to neural cell adhesion molecule 2, large isoform precursor gb|M76710 from Xenopus laevis, and beta transducin from S. cerevisiae gb|Q05946. ESTs gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101, gb|H36304, and gb|N65606 come from
		RAFL05-21-H02	At1g15920 / BTG1 binding factor 1 -related		RAFL05-21-H02 ,At1g15920 CCR4-NOT transcription complex protein, putative similar to SWISS-PROT:Q60809 CCR4-NOT transcription complex, subunit 7 (CCR4-associated factor 1, (CAF1) [Mus musculus]
		RAFL09-17-J17	At1g49160 / protein kinase family		RAFL09-17-J17 ,At1g49160 protein kinase family protein contains protein kinase domain, Pfam:PF00069
		RAFL09-07-D22	At1g16670 / protein kinase family		RAFL09-07-D22 ,At1g16670 protein kinase family protein contains protein kinase domain, Pfam:PF00069; similar to receptor-like serine/threonine kinase GI:2465923 from [Arabidopsis thaliana]
		RAFL04-18-D20	At1g78570 / NAD-dependent epimerase/dehydratase family		At1g78570 ,RAFL04-18-D20 NAD-dependent epimerase/dehydratase family protein similar to dTDP-glucose 4,6-dehydratase from Aneurinibacillus thermoaerophilus GI:16357461, RmlB from Leptospira borgpetersenii GI:4234803; contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family
		RAFL04-19-J24	At1g20920 / DEAD box RNA helicase, putative		At1g20920 ,RAFL04-19-J24 DEAD box RNA helicase, putative similar to RNA helicase [Rattus norvegicus] GI:897915; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain
		RAFL07-14-O09	At1g49710 / fucosyltransferase, putative		RAFL07-14-O09 ,At1g49710 fucosyltransferase-like protein, putative / FucT2, putative / FucTB, putative (FUT12) identical to Putative fucosyltransferase-like protein (FucTB) (FucT2) (AtFUT12) (Swiss-Prot:Q9FX97) [Arabidopsis thaliana]; similar to glycoprotein 3-alpha-L-fucosyltransferase A (SP:Q9LJK1) [Arabidopsis thaliana]; contains Pfam profile PF00852: Fucosyl transferase
		RAFL09-18-J20	At1g52740 / histone H2A, putative		RAFL09-18-J20 ,At1g52740 histone H2A, putative similar to histone H2A.F/Z Arabidopsis thaliana GI:2407800; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
		RAFL05-12-O04	At1g16010 / expressed protein		At1g16010 ,RAFL05-12-O04 magnesium transporter CorA-like family protein (MRS2-1) low similarity to SP|Q01926 RNA splicing protein MRS2, mitochondrial precursor {Saccharomyces cerevisiae}; contains Pfam profile PF01544: CorA-like Mg2+ transporter protein
		RAFL07-13-L09	At1g33980 / expressed protein		At1g33980 ,RAFL07-13-L09 Smg-4/UPF3 family protein contains Pfam PF03467: Smg-4/UPF3 family; similar to hUPF3B (GI:12232324) [Homo sapiens]
		RAFL05-08-M04	At1g61740 / expressed protein		RAFL05-08-M04 ,At1g61740 expressed protein contains Pfam profile: PF01925 domain of unknown function DUF81; identical to cDNA hypothetical protein, partial GI:4079631
		RAFL03-01-D05	At1g07080 / expressed protein		RAFL03-01-D05 ,At1g07080 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein similar to SP|P13284 Gamma-interferon inducible lysosomal thiol reductase precursor {Homo sapiens}; contains Pfam profile PF03227: Gamma interferon inducible lysosomal thiol reductase (GILT)
		RAFL08-13-A20	At1g33230 / expressed protein		At1g33230 ,RAFL08-13-A20 expressed protein
		RAFL05-09-P18	At1g53320 / F-box containing tubby family protein		RAFL05-09-P18 ,At1g53320 F-box family protein / tubby family protein (TULP7) similar to Tubby related protein 2 (Tubby-like protein 2) (P4-6 protein) (Fragment) (SP:P46686) [Mus musculus]; similar to phosphodiesterase (GI:467578) [Mus musculus]; similar to Tubby protein homolog 1. (Swiss-Prot:Q09306) [Caenorhabditis elegans] contains Pfam profile: PF01167: Tub family; contains Pfam PF00646: F-box domain
		RAFL08-12-N08	At1g71040 / multicopper oxidase, type 1 family		At1g71040 ,RAFL08-12-N08 multi-copper oxidase type I family protein similar to SP|P07788 Spore coat protein A {Bacillus subtilis}; contains Pfam profile PF00394: Multicopper oxidase
		RAFL04-10-F21	At1g61250 / secretory carrier membrane protein		At1g61250 ,RAFL04-10-F21 secretory carrier membrane protein (SCAMP) family protein (SC3) contains Pfam domain, PF04144: SCAMP family
		RAFL07-18-M23	At1g10080 / unknown similar to AGI		RAFL07-18-M23 ,At1g10080 http://rarge.gsc.riken.go.jp/microarray/microarray_data2.pl?ALL_EX=on&NC_FLAG=display&LOG=on&ID=RAFL07-18-M23
		RAFL04-13-M11	At1g04260 / expressed protein		At1g04260 ,RAFL04-13-M11 prenylated rab acceptor (PRA1) family protein weak similarity to prenylated Rab acceptor [Mus musculus] GI:7716652; contains Pfam profile PF03208: Prenylated rab acceptor (PRA1)
		RAFL07-11-D20	At1g16860 / expressed protein		At1g16860 ,RAFL07-11-D20 merozoite surface protein-related contains weak similarity to merozoite surface protein [Plasmodium falciparum] gi|12043655|gb|AAG47601
		RAFL05-08-H19	At1g68820 / expressed protein		RAFL05-08-H19 ,At1g68820 membrane protein, putative contains 7 transmembrane domains; similar to inhibitor of apoptosis-2 IAP-2 (GI:20043383) [Mamestra configurata nucleopolyhedrovirus]
		RAFL07-13-G24	At1g03040 / bHLH protein		At1g03040 ,RAFL07-13-G24 basic helix-loop-helix (bHLH) family protein component of the pyruvate dehydrogenase complex E3, contains PF|00010 helix-loop-helix DNA-binding domain. ESTs gb|T45640 and gb|T22783 come from this gene
		RAFL09-06-D22	At1g79690 / MutT/nudix family protein		At1g79690 ,RAFL09-06-D22 MutT/nudix family protein contains Pfam NUDIX domain [PF00293]; very low similarity to Chain A and Chain B of Escherichia coli isopentenyl diphosphate:dimethylallyl diphosphate isomerase [gi:15826361] [gi:15826360]
		RAFL09-15-I11	At1g37130 / nitrate reductase 2 (NR2)		RAFL09-15-I11 ,At1g37130 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
		RAFL09-16-H09	At1g20980 / SPL1-related protein -related		RAFL09-16-H09 ,At1g20980 SPL1-Related2 protein (SPL1R2) strong similarity to SPL1-Related2 protein [Arabidopsis thaliana] GI:6006427; contains Pfam profile PF03110: SBP domain
		RAFL07-07-H04	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		RAFL07-07-H04 ,At1g22710 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
		RAFL06-14-H20	At1g04850 / expressed protein		RAFL06-14-H20 ,At1g04850 ubiquitin-associated (UBA)/TS-N domain-containing protein weak similarity to SP|P45974 Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15) {Homo sapiens}; contains Pfam profile PF00627: UBA/TS-N domain
		RAFL04-09-P08	At1g32490 / RNA helicase, putative		RAFL04-09-P08 ,At1g32490 RNA helicase, putative similar to ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain
		RAFL06-15-D19	At1g13580 / longevity assurance protein -related		RAFL06-15-D19 ,At1g13580 longevity-assurance (LAG1) family protein similar to Alternaria stem canker resistance protein (ASC1) [Lycopersicon esculentum] GI:7688742; contains Pfam profile PF03798: Longevity-assurance protein (LAG1)
		RAFL03-07-O21	At1g19570 / dehydroascorbate reductase, putative		RAFL03-07-O21 ,At1g19570 dehydroascorbate reductase, putative similar to GB:BAA90672 from (Oryza sativa)
		RAFL08-10-J10	At1g04990 / zinc finger protein 2 -related		RAFL08-10-J10 ,At1g04990 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
		RAFL09-13-D16	At1g53210 / expressed protein		RAFL09-13-D16 ,At1g53210 sodium/calcium exchanger family protein / calcium-binding EF hand family protein contains Pfam profiles: PF01699 sodium/calcium exchanger protein, PF00036 EF hand
		RAFL09-14-L13	At1g63420 / expressed protein		RAFL09-14-L13 ,At1g63420 expressed protein
		RAFL05-16-L12	At1g22710 / sucrose transporter SUC2 (sucrose-proton symporter)		At1g22710 ,RAFL05-16-L12 sucrose transporter / sucrose-proton symporter (SUC2) nearly identical to sucrose-proton symporter SUC2 [Arabidopsis thaliana] GI:407092
		RAFL04-13-J08	At1g80130 / expressed protein		At1g80130 ,RAFL04-13-J08 expressed protein
		RAFL08-15-G22	At1g17440 / expressed protein		At1g17440 ,RAFL08-15-G22 transcription initiation factor IID (TFIID) subunit A family protein similar to SP|Q16514 Transcription initiation factor TFIID 20/15 kDa subunits (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam profile PF03847: Transcription initiation factor TFIID subunit A
		RAFL09-16-K08	At1g70810 / C2 domain-containing protein		RAFL09-16-K08 ,At1g70810 C2 domain-containing protein similar to zinc finger and C2 domain protein GI:9957238 from [Arabidopsis thaliana]
		RAFL06-13-N05	At1g47240 / NRAMP metal ion transporter 2, putative (NRAMP2)		RAFL06-13-N05 ,At1g47240 NRAMP metal ion transporter 2, putative (NRAMP2) similar to metal transporter Nramp3 [Arabidopsis thaliana] gi|6468012|gb|AAF13278; member of the natural resistance-associated macrophage protein (NRAMP) metal transporter family, PMID:11500563
		RAFL07-13-I02	At1g30810 / expressed protein		At1g30810 ,RAFL07-13-I02 transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein contains similarity to Swiss-Prot:P29375 retinoblastoma-binding protein 2 (RBBP-2) [Homo sapiens]; contains Pfam domains PF02375: jmjN domain and PF02373: jmjC domain; intron between exons 6 and 7 was required to circumvent a frameshift. There could be an underlying sequence error.
		RAFL05-09-A05	At1g63490 / RB-binding protein -related		At1g63490 ,RAFL05-09-A05 transcription factor jumonji (jmjC) domain-containing protein similar to PLU-1 protein (GI:4902724) [Homo sapiens] and PLU1 (GI:22726257) [Mus musculus]; similar to Retinoblastoma-binding protein 2 (RBBP-2) (SP:P29375) {Homo sapiens}; contains Pfam PF02373: jmjC domain
		RAFL05-08-K14	At1g72175 / C3HC4-type zinc finger protein family		At1g72175 ,RAFL05-08-K14 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)
		RAFL02-06-O21	At1g26665 / expressed protein		At1g26665 ,RAFL02-06-O21 expressed protein
		RAFL07-07-K16	At1g35670 / calcium-dependent protein kinase (CDPK)		RAFL07-07-K16 ,At1g35670 calcium-dependent protein kinase 2 (CDPK2) identical to calcium-dependent protein kinase [Arabidopsis thaliana] gi|604881|dbj|BAA04830; contains protein kinase domain, Pfam:PF00069; contains EF hand domain (calcium-binding EF-hand), Pfam:PF00036, INTERPRO:IPR002048
		RAFL06-07-P06	At1g72360 / ethylene responsive element binding factor (EREBP), putative		RAFL06-07-P06 ,At1g72360 ethylene-responsive element-binding protein, putative contains Pfam profile: PF00847 AP2 domain; similar to ethylene responsive element binding protein (GI:18496063)[Fagus sylvatica]
		RAFL05-09-D08	At1g66160 / expressed protein		RAFL05-09-D08 ,At1g66160 U-box domain-containing protein similar to immediate-early fungal elicitor protein CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam profile PF04564: U-box domain
		RAFL09-16-B05	At1g79975 / expressed protein		At1g79975 ,RAFL09-16-B05 expressed protein
		RAFL06-12-C16	At1g56200 / expressed protein		RAFL06-12-C16 ,At1g56200 expressed protein
		RAFL04-17-L18	At1g07670 / calcium-transporting ATPase 4, endoplasmic reticulum-type (calcium pump)		At1g07670 ,RAFL04-17-L18 calcium-transporting ATPase 4, endoplasmic reticulum-type (ECA4) identical to SP|Q9XES1 Calcium-transporting ATPase 4, endoplasmic reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana); contains InterPro Accession IPR006069: Cation transporting ATPase
		RAFL05-20-M22	At1g64740 / tubulin alpha-1 chain (TUA1)		RAFL05-20-M22 ,At1g64740 tubulin alpha-1 chain (TUA1) nearly identical to SP|P11139 Tubulin alpha-1 chain {Arabidopsis thaliana}
		RAFL05-18-I06	At1g28710 / expressed protein		RAFL05-18-I06 ,At1g28710 expressed protein similar to GI:2827651, GI:7527728, GI:4406788, GI:6063544, GI:10764853 from [Arabidopsis thaliana]
		RAFL06-13-I03	At1g18360 / hydrolase, alpha/beta fold family		RAFL06-13-I03 ,At1g18360 hydrolase, alpha/beta fold family protein similar to monoglyceride lipase from [Homo sapiens] GI:14594904, [Mus musculus] GI:2632162,[Rattus norvegicus] GI:19697886; contains Pfam profile PF00561: hydrolase, alpha/beta fold family
		RAFL09-11-L17	At1g10410 / expressed protein		RAFL09-11-L17 ,At1g10410 expressed protein similar to ESTs gb|N96021 and gb|N96863
		RAFL07-08-G04	At1g68550 / AP2 domain transcription factor, putative		RAFL07-08-G04 ,At1g68550 AP2 domain-containing transcription factor, putative contains Pfam profile: PF00847 AP2 domain
		RAFL04-17-N08	At1g63900 / C3HC4-type zinc finger protein family		At1g63900 ,RAFL04-17-N08 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)
		RAFL09-18-B11	At1g13195 / C3HC4-type zinc finger protein family		RAFL09-18-B11 ,At1g13195 zinc finger (C3HC4-type RING finger) family protein similar to MTD2 [Medicago truncatula] GI:9294812; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger)
		RAFL05-16-H11	At1g15130 / proline-rich protein family		RAFL05-16-H11 ,At1g15130 hydroxyproline-rich glycoprotein family protein
		RAFL08-12-O19	At1g04690 / potassium channel protein, putative		RAFL08-12-O19 ,At1g04690 potassium channel protein, putative nearly identical to K+ channel protein [Arabidopsis thaliana] GI:1063415; contains Pfam profile PF00248: oxidoreductase, aldo/keto reductase family
		RAFL05-05-F21	At1g34370 / zinc finger protein -related		At1g34370 ,RAFL05-05-F21 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type
		RAFL05-19-K20	At1g27510 / hypothetical protein		At1g27510 ,RAFL05-19-K20 expressed protein
		RAFL09-09-J08	At1g47530 / ripening regulated protein, putative		RAFL09-09-J08 ,At1g47530 ripening-responsive protein, putative similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family
		RAFL09-10-K04	At1g26270 / phosphatidylinositol 3- and 4-kinase family		RAFL09-10-K04 ,At1g26270 phosphatidylinositol 3- and 4-kinase family protein similar to phosphatidylinositol 4-kinase type-II beta [Homo sapiens] GI:20159767; contains Pfam profile PF00454: Phosphatidylinositol 3- and 4-kinase
		RAFL07-07-A03	At1g36730 / Eukaryotic translation initiation factor 5 -related		At1g36730 ,RAFL07-07-A03 eukaryotic translation initiation factor 5, putative / eIF-5, putative similar to SP|P55876 Eukaryotic translation initiation factor 5 (eIF-5) {Zea mays}; contains Pfam profiles PF02020: eIF4-gamma/eIF5/eIF2-epsilon, PF01873: Domain found in IF2B/IF5
	Cluster:0-1				35	71	1084	3473	0.037540954	1.2388514	33
		RAFL03-06-N04	At1g55670 / photosystem I subunit V precursor -related		RAFL03-06-N04 ,At1g55670 photosystem I reaction center subunit V, chloroplast, putative / PSI-G, putative (PSAG) identical to SP|Q9S7N7; similar to SP|Q00327 Photosystem I reaction center subunit V, chloroplast precursor (PSI-G) (Photosystem I 9 kDa protein) {Hordeum vulgare}; contains Pfam profile PF01241: Photosystem I psaG / psaK
		RAFL04-19-M17	At1g32060 / phosphoribulokinase precursor		RAFL04-19-M17 ,At1g32060 phosphoribulokinase (PRK) / phosphopentokinase nearly identical to SP|P25697 Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19) (Phosphopentokinase) (PRKASE) (PRK) {Arabidopsis thaliana}
		RAFL06-08-C03	At1g31580 / ORF1		At1g31580 ,RAFL06-08-C03 expressed protein identical to ORF1 [Arabidopsis thaliana] gi|457716|emb|CAA50905
		RAFL05-16-P12	At1g67740 / F12A21.13		RAFL05-16-P12 ,At1g67740 photosystem II core complex proteins psbY, chloroplast (PSBY) / L-arginine metabolising enzyme identical to SP:O49347 Photosystem II core complex proteins psbY, chloroplast precursor (L-arginine metabolising enzyme) (L-AME) [Contains: Photosystem II protein psbY-1 (psbY-A1); Photosystem II protein psbY-2 (psbY-A2)] [Arabidopsis thaliana]
		RAFL05-04-D24	At1g52230 / photosystem I subunit VI precursor		At1g52230 ,RAFL05-04-D24 photosystem I reaction center subunit VI, chloroplast, putative / PSI-H, putative (PSAH2) identical to SP|Q9SUI6; similar to PSI-H precursor [Nicotiana sylvestris] GI:407355; contains Pfam profile PF03244: Photosystem I reaction centre subunit VI
		RAFL06-07-I03	At1g50900 / expressed protein		At1g50900 ,RAFL06-07-I03 expressed protein
		RAFL07-07-O16	At1g75500 / nodulin MtN21 family protein		At1g75500 ,RAFL07-07-O16 nodulin MtN21 family protein similar to MtN21 GB:CAA75575 GI:2598575 from (Medicago truncatula) (Mol. Plant Microbe Interact. 9 (4), 233-242 (1996)); contains Pfam profile PF00892: Integral membrane protein
		RAFL05-03-B20	At1g52400 / glycosyl hydrolase family 1, beta-glucosidase (BG1)		RAFL05-03-B20 ,At1g52400 glycosyl hydrolase family 1 protein / beta-glucosidase, putative (BG1) contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to GI:6651430 from [Arabidopsis thaliana]
		RAFL05-18-I22	At1g44575 / photosystem II 22kDa protein -related		At1g44575 ,RAFL05-18-I22 photosystem II 22kDa protein, chloroplast / CP22 (PSBS) identical to photosystem II 22 kDa protein, chloroplast [precursor] SP:Q9XF91 from [Arabidopsis thaliana]; contains Pfam profile PF00504: Chlorophyll A-B binding protein
		RAFL06-15-C10	At1g75500 / nodulin MtN21 family protein		At1g75500 ,RAFL06-15-C10 nodulin MtN21 family protein similar to MtN21 GB:CAA75575 GI:2598575 from (Medicago truncatula) (Mol. Plant Microbe Interact. 9 (4), 233-242 (1996)); contains Pfam profile PF00892: Integral membrane protein
		RAFL05-04-M03	At1g32470 / glycine cleavage system H protein precursor -related		At1g32470 ,RAFL05-04-M03 glycine cleavage system H protein, mitochondrial, putative similar to SP|P25855 Glycine cleavage system H protein 1, mitochondrial precursor {Arabidopsis thaliana}; contains Pfam profile PF01597: Glycine cleavage H-protein
		RAFL05-11-D11	At1g55490 / RuBisCo subunit binding-protein beta subunit/60 kDa chaperonin beta subunit		RAFL05-11-D11 ,At1g55490 RuBisCO subunit binding-protein beta subunit, chloroplast / 60 kDa chaperonin beta subunit / CPN-60 beta i