Identification of a cis-regulatory element by transient analysis of co-ordinately regulated genes.

Dare AP, Schaffer RJ, Lin-Wang K, Allan AC, Hellens RP.

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Putative cold acclimation pathways in Arabidopsis thaliana identified by a combined analysis of mRNA co-expression patterns, promoter motifs and transcription factors.

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Identification of cis-elements that regulate gene expression during initiation of axillary bud outgrowth in Arabidopsis.

Tatematsu K, Ward S, Leyser O, Kamiya Y, Nambara E.

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Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor.

Tohge T, Nishiyama Y, Hirai MY, Yano M, Nakajima J, Awazuhara M, Inoue E, Takahashi H, Goodenowe DB, Kitayama M, Noji M, Yamazaki M, Saito K.

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Cis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequilibrium in eukaryote genomes using frequency distribution curves.

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AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.

Palaniswamy SK, James S, Sun H, Lamb RS, Davuluri RV, Grotewold E.

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Expression analysis of anthocyanin regulatory genes in response to different light qualities in Arabidopsis thaliana.

Cominelli E, Gusmaroli G, Allegra D, Galbiati M, Wade HK, Jenkins GI, Tonelli C.

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Co-expression of adjacent genes in yeast cannot be simply attributed to shared regulatory system.

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Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors.

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Analysis of plant regulatory DNA sequences by transient protoplast assays and computer aided sequence evaluation.

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Nitrogen deficiency enhances expression of specific MYB and bHLH transcription factors and accumulation of end products in the flavonoid pathway.

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Ethanol-responsive genes: identification of transcription factors and their role in metabolomics.

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