A plant resource and experiment management system based on the Golm Plant Database as a basic tool for omics research

doi:10.1186/1746-4811-4-11

Plant Methods

Volume 4

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Köhl KI
Basler G
Lüdemann A
Selbig J
Walther D

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Basler G
Lüdemann A
Selbig J
Walther D
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Methodology

A plant resource and experiment management system based on the Golm Plant Database as a basic tool for omics research

Karin I Köhl¹ , Georg Basler² , Alexander Lüdemann¹ , Joachim Selbig² and Dirk Walther¹

¹Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Golm, Germany

²University of Potsdam, 14469 Potsdam, Germany

author email corresponding author email

Plant Methods 2008, 4:11doi:10.1186/1746-4811-4-11


Published:	21 May 2008

Additional files

Additional file 2:

Access. Diagram displaying the entity-relation-model of the ACCESS database used by the plant cultivation service. Upper half displays tables to describe standard cultivation protocols and their link to the LIMS. In this part, the cultivation steps and the containers, substrates, fertilizers and nutrient solutions used in these steps are documented. The lower half shows tables containing information on plant cultivation sites (locations), namely on the reservation status and on the climate conditions between defined dates and on pesticides that have been applied in these locations on a defined date. Objects are depicted as rectangles containing the respective attributes, foreign key relations as arrows. Primary key attributes are underlined.

Format: PDF Size: 28KB Download file

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Additional file 1:

NautilusOracle. LIMS objects representing plants, plant lines, cultures and samples. Objects are depicted as rectangles containing the respective attributes, foreign key relations as arrows. Primary key attributes are underlined and denoted by PK, foreign keys by FK1 to FK10. Mandatory attributes are printed bold.

Format: PDF Size: 44KB Download file

This file can be viewed with: Adobe Acrobat Reader

Additional file 3:

Samplecomposer. The zip-file contains the source code and a demo version of the sample composer and the controlled vocabulary for organ and treatment as csv files.

Format: ZIP Size: 339KB Download file