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miRNA, primer and probe sequences |
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| miR156 |
miRNA sequence |
UGACAGAAGAGAGUGAGCAC |
| Antisense probe |
GTGCTCACTCTCTTCTGTCA |
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| Sense probe |
TGACAGAAGAGAGTGAGCAC |
|
| RT primer |
GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACGTGCTC |
|
| Forward primer |
GCGGCGGTGACAGAAGAGAGT |
|
| UPL RT primer |
GTTGGCTCTGGTGCAGGGTCCGAGGTATTCGCACCAGAGCCAACGTGCTC |
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| miR156RC |
RT primer |
GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACTGACAG |
| Forward primer |
GCGGCGTGTGCTCACTCTCT |
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| miR159 |
miRNA sequence |
UUUGGAUUGAAGGGAGCUCUA |
| Antisense probe |
TAGAGCTCCCTTCAATCCAAA |
|
| Sense probe |
TTTGGATTGAAGGGAGCTCTA |
|
| RT primer |
GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACTAGAGC |
|
| Forward primer |
CGGCGGTTTGGATTGAAGGGA |
|
| UPL RT primer |
GTTGGCTCTGGTGCAGGGTCCGAGGTATTCGCACCAGAGCCAACTAGAGC |
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| miR159RC |
RT primer |
GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACTTTGGA |
| Forward primer |
CGGCGGTAGAGCTCCCTTCAA |
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| miR167 |
miRNA sequence |
UGAAGCUGCCAGCAUGAUCUA |
| Antisense probe |
TAGATCATGCTGGCAGCTTCA |
|
| Sense probe |
TGAAGCTGCCAGCATGATCTA |
|
| RT primer |
GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACTAGATC |
|
| Forward primer |
TCGCGTGAAGCTGCCAGCAT |
|
| UPL RT primer |
GTTGGCTCTGGTGCAGGGTCCGAGGTATTCGCACCAGAGCCAACTAGATC |
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| miR167RC |
RT primer |
GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACTGAAGC |
| Forward primer |
GGCGGTAGATCATGCTGGCA |
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| miR171 |
miRNA sequence |
UGAUUGAGCCGCGCCAAUAUC |
| Antisense probe |
GATATTGGCGCGGCTCAATCA |
|
| RT primer |
GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACGATATT |
|
| Forward primer |
TTCCTTGATTGAGCCGCGCC |
|
| UPL RT primer |
GTTGGCTCTGGTGCAGGGTCCGAGGTATTCGCACCAGAGCCAACGATATT |
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| miR166 |
miRNA sequence |
UCGGACCAGGCUUCAUUCCCC |
| RT primer |
GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACGGGGAA |
|
| Forward primer |
TCGCTTCGGACCAGGCTTCA |
|
| UPL RT primer |
GTTGGCTCTGGTGCAGGGTCCGAGGTATTCGCACCAGAGCCAACGGGGAA |
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| Universal |
Reverse primer |
GTGCAGGGTCCGAGGT |
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| CmRBS |
Forward primer |
ATGGCTTCCATCGTCTCATCCGCC |
| Reverse primer |
TTGTCGAAGCCAATGACTCTGATGAA |
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| CmPP16 |
Forward primer |
GTGGTAAAGGACTTCAAGCCCACGACC |
| Reverse primer |
ATGGGTTTGAAGAAGCCAAGCCACTTA |
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UPL probe #21 reverse complement sequence is highlighted in bold. | ||
Varkonyi-Gasic et al. Plant Methods 2007 3:12 doi:10.1186/1746-4811-3-12 |
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