Table 1

MapMan BINs. Description of MapMan BINs. The percentage of all clones in StGI present in a specific BIN is shown. The number of clones present on the microarray is also denoted. BINs written in bold are completely covered on the potato 10 k microarray, meaning that each subBIN has at least one representative on the potato 10 k microarray. Note: percentages may not sum to 100 due to rounding errors.
BIN code
 BIN name
 % of all StGI clones
 number on microarray
0
 control genes
 0.2
 96
1
 photosynthesis
 0.8
 197
2
 major carbohydrates
 0.5
 90
3
 minor carbohydrates
 0.4
 79
4
 glycolysis
 0.3
 63
5
 fermentation
 0.06
 11
6
 gluconeogenesis/glyoxylate cycle
 0.02
 7
7
 oxidative pentose phosphate pathway
 0.1
 25
8
 TCA cycle/organic acid transformations
 0.3
 57
9
 mitochondrial electron transport/ATP synthesis
 0.4
 82
10
 cell wall
 1
 200
11
 lipid metabolism
 1
 241
12
 nitrogen metabolism
 0.08
 17
13
 amino acid metabolism
 1
 296
14
 sulphur assimilation
 0.05
 13
15
 metal handling
 2
 44
16
 secondary metabolism
 1
 266
17
 hormone metabolism
 2
 274
18
 cofactor and vitamin synthesis
 0.1
 21
19
 tetrapyrrole synthesis
 0.2
 45
20
 stress
 3
 489
21
 redox
 0.6
 133
22
 polyamine metabolism
 0.08
 25
23
 nucleotide metabolism
 0.5
 113
24
 biodegradation of xenobiotics
 0.06
 11
25
 C1 metabolism
 0.1
 20
26
 miscellaneous enzyme families
 4
 605
27
 RNA
 7
 1174
28
 DNA
 1
 194
29
 protein
 9
 1722
30
 signalling
 3
 521
31
 cell
 2
 300
33
 development
 1
 234
34
 transport
 2
 375
35
 not assigned
 55
 6143

Rotter et al. Plant Methods 2007 3:10   doi:10.1186/1746-4811-3-10