ModuleFinder and CoReg: alternative tools for linking gene expression modules with promoter sequences motifs to uncover gene regulation mechanisms in plants
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* Corresponding author: James Whelan seamus@cyllene.uwa.edu.au
Plant Methods 2006, 2:8 doi:10.1186/1746-4811-2-8
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Development of a novel data mining tool to find cis-elements in rice gene promoter regions Koji Doi, Aeni Hosaka, Toshifumi Nagata, Kouji Satoh, Kohji Suzuki, Ramil Mauleon, Michael J Mendoza, Richard Bruskiewich, Shoshi Kikuchi BMC Plant Biology 2008, 8:20 (27 February 2008) A new online tool identifies candidate cis-regulatory elements associated with the promoter regions of user specified rice genes by finding statistically overrepresented and conserved regulatory sequences.
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